2017

Andralojc KM, Campbell AC, Kelly AL, Terrey M, Tanner PC, Gans IM, Senter-Zapata MJ, Khokhar ES, Updike DL. ELLI-1, a novel germline protein, modulates RNAi activity and P-granule accumulation in Caenorhabditis elegans. PLoS Genet. 2017 Feb 9. PMID: 28182654 PMCID: PMC5325599.

Davis AP, Grondin CJ, Johnson RJ, Sciaky D, King BL, McMorran R, Wiegers J, Wiegers TC, Mattingly CJ. The Comparative Toxicogenomics Database: update 2017. Nucleic Acids Res. 2017 Jan 4;45(D1):D972-D978. doi: 10.1093/nar/gkw838. PMID: 27651457. PubMed Central PMCID: PMC5210612.

Dimitriadi, M, Derdowski, A, Kalloo, G, Maginnis, MS, Bliska, B, O’ Hern, P, Nguyen, KCQ, Cook, SJ, Poulogiannis, G, Atwood, WJ, Hall, DH, and Hart, AC. Decreased Function of Survival Motor Neuron Protein Impairs Endocytic Pathways. PMID: 27402754 PMCID: PMC4968725.

Godwin JW, Pinto AR, Rosenthal NA. Chasing the recipe for a pro-regenerative immune system. Review. Semin Cell Dev Biol. 2017 Jan;61:71-79. doi: 10.1016/j.semcdb.2016.08.008. Review. PubMed PMID: 27521522. PMCID: PMC5338634.

Mangiamele, LL, Gomez, JR, Curtis, NL, Thompson, RR. GPER/GPR30, a membrane estrogen receptor, is expressed in brain and retina of a social fish (Carassius auratus) and co-localizes with isotocin. Journal of Comparative Neurology, 2017 Feb 1;525(2):252-270.  PMID: 27283982;  PMCID: PMC5138143.

Rollins JA, Howard AC, Dobbins SK, Washburn EH, Rogers AN. Assessing Health Span in Caenorhabditis elegans: Lessons From Short-Lived Mutants. J Gerontol A Biol Sci Med Sci. 2017 Feb 2. doi: 10.1093/gerona/glw248. [Epub ahead of print]. PMID: 28158466 DOI: 10.1093/gerona/glw248.

2016

Bavis RW, Li KY, DeAngelis KJ, March RJ, Wallace JA, Logan S, Putnam RW. Ventilatory and chemoreceptor responses to hypercapnia in neonatal rats chronically exposed to moderate hyperoxia. Respir Physiol Neurobiol. 2016 Dec 26;237:22-34. PMID: 28034711. PMCID: PMC5272815.

Blick AJ, Mayer-Hirshfeld I, Malibiran BR, Cooper MA, Martino PA, Johnson JE, Bateman JR. The capacity to act in trans varies among Drosophila enhancers. Genetics. 2016 May; 203(1):203-18. PMID: 26984057; PMCID: PMC4858774.

Bodnar Ag, Coffman JA. Maintenance of somatic tissue regeneration with age in short- and long-lived species of sea urchins. Aging Cell 2016 Aug;15(4): 778-87. PMID: 27095483. PMCID: PMCID 4933669.

Christie AE, Ch, M, Lameyer TJ, Pascual MG, Shea DN, Stanhope ME, Schulz DJ, Dickinson PS  2016.  Neuropeptidergic signaling in the American lobster Homarus americanus: new insights from high-throughput nucleotide sequencing.  PLoS ONE. PMID: 26716450. PMCID: PMC4696782.

Clark EL, Emmadi M, Krupp KL, Podilapu AR,  Helble JD, Kulkarni SS, Dube DH, Development of rare bacterial monosaccharide analogs for metabolic glycan labeling in pathogenic bacteria, ACS Chemical Biology 2016, 11, 3365-3373. PMID: 27766829. PMCID: PMCID: PMC5161589 [Available on 2017-12-16].

Davis AP, Wiegers TC, King BL, Wiegers J, Grondin CJ, Sciaky D, Johnson RJ, Mattingly CJ. Generating Gene Ontology-Disease Inferences to Explore Mechanisms of Human Disease at the Comparative Toxicogenomics Database. PLoS One. 2016 May 12;11(5):e0155530. doi: 10.1371/journal.pone.0155530. PMID: 27171405; PMCID: PMC4865041.

Dearborn DC, Gager AB, McArthur AG, Gilmour ME, Mandzhukova E, Mauck RA.  Gene duplication and divergence produce diverse MHC genotypes without disassortative mating.  Molecular Ecology 2016; 25: 4355-4367.  PMID: 27376487.  PMCID:  PMC5021581.

Dickinson PS, Qu,X, Stanhope, M.  Neuropeptide modulation of pattern-generating systems in crustaceans: Comparative studies and approaches. Review. Current Opinion in Neurobiology 2016; 41:149-157.  PMID: 27693928; PMCID: PMC5123900.

Dickinson, ES, AS Johnson, O Ellers, PS Dickinson.  Forces generated during stretch in the heart of the lobster Homarus americanus are anisotropic and are altered by neuromodulators. J Exp Biol. 2016;  219:1187-202. PMID: 26896540 PMCID: PMC4852687.

Dimitriadi M, Derdowski A, Kalloo G, Maginnis MS, Bliska B, O’ Hern P, Nguyen KCQ, Cook SJ, Poulogiannis G, Atwood WJ, Hall DH, Hart AC. Decreased Function of Survival Motor Neuron Protein Impairs Endocytic Pathways. PNAS 2016 July;113(30): E4377-86. PMID: 27402754. PMCID:  PMC4968725.

Grondin CJ, Davis AP, Wiegers TC, King BL, Wiegers JA, Reif DM, Hoppin JA, Mattingly CJ. Advancing Exposure Science through Chemical Data Curation and Integration in the Comparative Toxicogenomics Database. Environ Health Perspect.  2016 Oct;124(10):1592-1599. PMID: 27170236; PMCID: PMC5047769.

Hartig EI, Zhu S, King BL, Coffman JA. Cortisol-treated zebrafish embryos develop into pro-inflammatory adults with aberrant immune gene regulation. Biol Open 2016 Aug 15;5(8): 1134-41. PMID: 27444789. PMCID: PMC5004618.

Hartig EI, Zhu S, King BL, Coffman JA. Cortisol-treated zebrafish embryos develop into pro-inflammatory adults with aberrant immune gene regulation. Biol Open. 2016 Aug 15;5(8):1134-41. doi: 10.1242/bio.020065. PMID: 27444789; PMCID: PMC5004618.

Hopke A, Nicke N, Hidu EE, Degani G, Popolo L, Wheeler RT. Neutrophil Attack Triggers Extracellular Trap-Dependent Candida Cell Wall Remodeling and Altered Immune Recognition. PLoS Pathog. 2016 May 25.  PMID: 27223610. PubMed Central PMCID: PMC4880299.

Howard AC, Rollins J, Snow S, Castor S, Rogers AN.  Reducing translation through eIF4G/IFG-1 improves survial under ER stress that depends on heat shock factor HSF-1 in Caenorhabditis elegans. Aging Cell 2016 Dec; 15(6): 1027-1038. PMID: 27538368. PMCID: PMC5114698.

King BL, Shi LF, Kao P, Clusin WT. Calcium activated K⁺ channels in the electroreceptor of the skate confirmed by cloning. Details of subunits and splicing. Gene. 2016 March 1;578(1):63-73. PubMed PMID: 26687710; PubMed Central PMCID: PMC4724458.

King BL, Yin VP. A Conserved MicroRNA Regulatory Circuit Is Differentially Controlled during Limb/Appendage Regeneration. PLoS One. 2016 Jun 29;11(6): e0157106. doi: 10.1371/journal.pone.0157106. PMID: 27355827; PMCID: PMC4927183.

King BL, Yin VP. A conserved microRNAs regulatory circuit is differentially controlled during limb/appendage regeneration. PLoS One. 2016 Jun 29;11(6):e0157106.  PMID: 27355827.  PMCID: PMC4927183.

Kohorn BD, Hoon D, Minkoff BB, Sussman MR, Kohorn SL. Rapid oligo-galacturonide induced changes in protein phosphorylation in Arabidopsis.  Mol Cell Proteomics. 2016 Apr;15(4):1351-9. PMID: 26811356;  PMCID: PMC4824860.

Korstanje R, Deutsch K, Bolanos-Palmieri P, Hanke N, Schroder P, Staggs L, Bräsen JH, Roberts IS, Sheehan S, Savage H, Haller H, Schiffer M. Loss of kynurenine 3-mono-oxygenase causes proteinuria. J Am Soc Nephrol 2016 Nov; 27(11): 3271-3277. PMID: 27020856. PMCID: PMC5084883 [available 2017-11-01].

Krasniak CS, Ahmad ST. The role of CHMP2B^Intron5 in autophagy and frontotemporal dementia. Review. Brain research. 2016 October 15;1649(Pt B):151-157. PubMed PMID: 26972529; PubMed Central PMCID: PMC5018243.

Lee EC, Kim H, Ditano J, Manion D, King BL, Strange K. Abnormal osmotic avoidance behavior in C. elegans is associated with increased hypertonic stress resistance and improved proteostasis. PLoS One. 2016 Apr 25;11(4):e0154156. PMID: 27111894. PMCID: PMC4844114.

Liao J, Seggio JA, Ahmad ST. Mutations in the circadian gene period alter behavioral and biochemical responses to ethanol in Drosophila. Behavioural Brain Research 2016 April 1; 302:213-9. PMID: 26802726 PMCID: PMC4769108.

Lisse TS, King BL, Rieger S. Comparative transcriptomic profiling of hydrogen peroxide signaling networks in zebrafish and human keratinocytes: Implications toward conservation, migration and wound healing. Sci Rep. 2016 Feb 5;6:20328. PMID: 26846883.  PMCID: PMC4742856.

Lisse TS, Middleton LJ, Pellegrini AD, Martin PB, Spaulding EL, Lopes O, Brochu EA, Carter EV, Waldron A, Rieger S. Paclitaxel-inducted epithelial damange and ectopic MMP-13 expression promotes neurotoxicity in zebrafish. Proc Natl Acad Sci USA. 2016 Apr 12;113(15):E2189-98. PMID: 27035978. PMCID: PMC4839466.

Logan S, Tobin KE, Fallon SC, Deng KS, McDonough AB, Bavis RW. Chronic intermittent hyperoxia alters the development of the hypoxic ventilatory response in neonatal rats. Respiratory physiology & neurobiology. 2016 January;220:69-80. PubMed PMID: 26444750; PubMed Central PMCID: PMC4688092.

Mills ML, Bragg J, Bruce A, Dehn A, Drouin J, Hefner M, Katon D, McHugh D, Zeba F, Bowman CA, Cresawn SG, Jacobs-Sera D, Russell DA, Pope WH, Hatfull GF, Dunbar DA, Zegers GP, Page ST. Genome Sequences of Newly Isolated Mycobacteriophages Forming Cluster S. Genome announcements. 2016 September 29;4(5). PubMed PMID: 27688332; PubMed Central PMCID: PMC5043550.

Rizzo F, Coffman JA, Arnone MI. An Elk transcription factor is required for Runx-dependent survival signaling in the sea urchin embryo. Developmental biology. 2016 August 1;416(1):173-86. PubMed PMID: 27235147; PubMed Central PMCID: PMC4961547.

Godwin, James W, Debuque, R. Research into the cellular and molecular mechanisms of regeneration in salamanders: then and now. Book chapter in Regenerative Medicine: Innovations in Stem Cell and Tissue Engineering. Springer publishing. NY, USA.  In book: Innovations in Molecular Mechanisms and Tissue Engineering, pp.1-21.

Shim J, Kennedy RH, Weatherly LM, Hutchinson LM, Pelletier JH, Hashmi HN, Blais K, Velez A, Gosse JA. Arsenic inhibits mast cell degranulation via suppression of early tyrosine phosphorylation events. Journal of applied toxicology: JAT. 2016 November;36(11):1446-59. PubMed PMID: 27018130; PubMed Central PMCID: PMC5040607.

Soto I, Grabowska WA , Onos KD, Graham LC, Jackson HM, Simeone SN, Howell GR. Meox2 haploinsufficiency increases neuronal cell loss in a mouse model of Alzheimer’s disease.  Neurobiology of Aging 2016. June: 42:50-60. PMCID: PMC4878023.

Soundararajan R, Stearns TM, Czachor A, Fukumoto J, Turn C, Westermann-Clark E, Breitzig M, Tan L, Lockey RF, King BL, Kolliputi N. Global gene profiling of aging lungs in Atp8b1 mutant mice. Aging (Albany NY). 2016 Sep 29;8(9):2232-2252. doi: 10.18632/aging.101056. PMID: 27689529; PMCID: PMC5076460.

Tarver JE, Dos `Reis M, Mirarab S, Moran RJ, Parker S, O’Reilly JE, King BL, O’Connell MJ, Asher RJ, Warnow T, Peterson KJ, Donoghue PC, Pisani D. The Interrelationships of Placental Mammals and the Limits of Phylogenetic Inference. Genome Biol Evol. 2016 Jan 5;8(2):330-44. doi: 10.1093/gbe/evv261. PMID: 26733575; PMCID: PMC4779606.

Teng B, Schroder P, Müller-Deile J, Schenk H, Staggs L, Tossidou I, Dikic I, Haller H, Schiffer M. CIN85 deficiency prevents nephrin endocytosis and proteinuria in diabetes. Diabetes 2016 Dec;65(12): 3667-3679. PMID: 27531950. PMCID: PMC5314701.

Weatherly LM1,2, Shim J2, Hashmi HN2, Kennedy RH1,2, Hess ST1,3, Gosse JA1,2.Antimicrobial agent triclosan is a proton ionophore uncoupler of mitochondria in living rat and human mast cells and in primary human keratinocytes, J Appl Toxicol. 2016 Jun;36(6):777-89. doi: 10.1002/jat.3209. Epub 2015 Jul 23. (). PMID: 26204821 PMCID: PMC4724348.

Williams LM, Lago B, McArthur AG, Raphenya AR, Pray N, Saleem N, Salas S, Paulson K, Mangar R, Liu Y, Vo AH, Shavit J. The transcription factor, Nuclear factor, erythroid 2 (Nfe2), is a regulator of the oxidative stress response during Danio rerio development. Aquatic Toxicology 2016 Nov; 180: 141-154. PMID: 27716579. PMCID: PMC5274700.

Wilson JJ, Grendler J, Dunlap-Smith A, Beal BF, and Page ST, “Analysis of Gene Expression in an Inbred Line of Soft-Shell Clams (Mya arenaria) Displaying Growth Heterosis: Regulation of Structural Genes and the NOD2 Pathway” International Journal of Genomics Volume 2016, Article ID 6720947, PMCID: 5086354.

Yamada T, Krzeminski M, Bozoky Z, Forman-Kay JD, Strange K. Role of CBS and Bateman domains in phosphorylation-dependent regulation of a CLC anion channel. Biophys J. 2016 Nov;111(9): 1876-1886. PMID: 27806269. PMCID: 5103030.

Yamada T, Strange K. Regulatory conformational coupling between CLC anion channel membrane and cytoplasmic domains. Biophys J. 2016 Nov;111(9): 1887-1896. PMID: 27806270. PMCID: PMC5103031.

Yamada T, Wondergem R, Morrison R, Yin VP, Strange K. Leucine-rich repeat containing protein LRRC8A is essential for swelling-activated Cl- currents and embryonic development in zebrafish. Physiol Rep. 2016 Oct;4(19): phy2. 12940.  PMID: 27688432. PMCID: PMC5064130.

2015

Arenas-Mena, C. and Coffman, J.A. (2015). Developmental control of transcriptional and proliferative potency during the evolution of complex multicellularity.  Dev. Dyn., 244 (10): 1193-1201.  PMCID: PMC4705838.

Bavis RW, Blegen HJ, Logan S, Fallon SC, McDonough AB. Role of TrkB during the postnatal development of the rat carotid body. Respiratory Physiology and Neurobiology 2015 Dec;219:18-24. PMID: 26222433. PMCID: PMC4639446.

Bahman Rostama, Jacqueline E. Turner, Guy T. Seavey, Christine R. Norton, Thomas Gridley, Calvin P.H. Vary, Lucy Liaw.  DLL4/Notch1 and BMP9 Interdependent Signaling Induces Human Endothelial Cell Quiescence via P27KIP1 and Thrombospondin-1.  Arteriosclerosis, Thrombosis, and Vascular Biology, 35(12):2626-37.  2015 Dec. PMCID: PMC4662626.

Beauchemin M, Smith A, Yin VP. Dynamic microRNA-101a and Fosab expression controls zebrafish heart regeneration. Development. 2015 Dec 1;142(23):4026-37. PMID: 26628091. PMCID: PMC4712838.

Campbell AC, Updike DL. CSR-1 and P granules suppress sperm-specific transcription in the C. elegans germline. Development. 2015 May 15;142(10):1745-55. PubMed PMID: 25968310; PubMed Central PMCID: PMC4440928.

Carrier, T.J., King, B.L., and Coffman, J.A.  (2015).  Gene expression changes associated with the developmental plasticity of sea urchin larvae in response to food availability.  Biol. Bull. 228: 171-180.  PMCID: PMC4706744.

Castro JB, Gould TJ. Neuro at the nanoscale: diffraction unlimited imaging with STED nanoscopy. J. Histochem Cytochem (2015) Dec; 63(12): 897-907. PMID: 26392517. PMCID: PMC4823800.

Davis AP, Grondin CJ, Lennon-Hopkins K, Saraceni-Richards C, Sciaky D, King BL, Wiegers TC, Mattingly CJ. The Comparative Toxicogenomics Database’s 10th year anniversary: update 2015. Nucleic Acids Res. 2015 43(Database issue):D914-20. PMID: 25326323. PMCID: PMC4384013.

Dickinson PS, Calkins A and Stevens JS. Related neuropeptides use different balances of unitary mechanisms to modulate the cardiac neuromuscular system in the American lobster, Homarus americanus.  J. Neurophysiology 2015 Feb; 113(3):856-70.  PMID: 25392168 PMCID: PMC4312872.

Dickinson PS, Sreekrishnan A, Kwiatkowski MA, Christie AE..  Distinct or shared actions of peptide family isoforms: I. Peptide-specific actions of pyrokinins in the lobster cardiac neuromuscular system. J Exp Biol. 2015 Sept; 218:2892-2904.  PMID: 26206360. PMCID: PMC4582170.

Dickinson PS, Kurland SC, Qu X, Parker BO, Sreekrishnan A, Kwiatkowski MA, Williams AH, Ysasi AB, Christie AE.. Distinct or shared actions of peptide family isoforms: II. Multiple pyrokinins exert similar effects in the lobster stomatogastric nervous system.  J Exp Biol. 2015 Sept; 218:2905-2917.  PMID: 26206359. PMCID: PMC4582171.

Farnham KR, Dube DH. A semester-long project-oriented biochemistry laboratory based on Helicobacter pylori urease. Biochemistry and Molecular Biology Education. 2015 Jul; 43: 333-340. PMID: 26173574. PMCID: PMC4573817.

Fromm B, Phillipp T, Peck LE, Johansen M, Tarver JE, King BL, Newcomb JM, Sempere LF, Flatmark K, Hovig E, Peterson KJ. A Uniform System for the Annotation of Vertebrate microRNA Genes and the Evolution of the Human microRNAome. Annu Rev Genet. 2015;49:213-42. doi: 10.1146/annurev-genet-120213-092023. Review. 2015. PMID: 26473382; PMCID: PMC4743252.

Gabor KA, Charette JR, Pietraszewski MJ, Wingfield DJ, Shim JS, Millard PJ, Kim CH. ADN-mda5 transgenic zebrafish model demonstrates that Mda5 plays an important role in snakehead rhabdovirus resistance. Dev Comp Immunol. 2015 Jan 26;PubMed PMID: 25634485; NIHMSID: 658653.

Hanke N, King BL, Vaske B, Haller H, Schiffer M. A Fluorescence-Based Assay for Proteinuria Screening in Larval Zebrafish (Danio rerio). Zebrafish. 2015 12(5):372-6.  PMID: 26125680. PMCID: PMC4593894.

Jung D, Adamo MA, Lehman RM, Barnaby R, Jackson CE, Jackson BP, Shaw JR, Stanton BA. A novel variant of aquaporin 3 is expressed in killifish (Fundulus heteroclitus) intestine. Comp Biochem Physiol C Toxicol Pharmacol. 2015 May;171:1-7. PubMed PMID: 25766383; PubMed Central PMCID: PMC4402271.

Kelly AL, Senter-Zapata MJ, Campbell AC, Lust HE, Theriault ME, Andralojc KM, Updike DL. A Forward Genetic Screen for Suppressors of Somatic P Granules in Caenorhabditis elegans. G3 (Bethesda). 2015 Jun 22;5(10):2209-15. doi: 10.1534/g3.115.019257. PubMed PMID: 26100681; PubMed Central PMCID: PMC4593002.

King BL, Shi LF, Kao P, Clusin WT. Calcium activated K+ channels in the electroreceptor of the skate confirmed by cloning. Details of subunits and splicing. Gene. 2015 Dec 11. pii: S0378-1119(15)01481-X. doi: 10.1016/j.gene.2015.12.010. [Epub ahead of print] PubMed PMID: 26687710. PMCID: PMC4724458.

Kohorn BD. (2015) The state of cell wall pectin monitored by associated kinases: A model. Plant Signal Behav. 2015; 10(7):e1035854.  PMID: 26251881. PMCID: PMC4622591.

Lisse TS, Brochu EA, Rieger S. Capturing tissue repair in zebrafish larvae with time-lapse brightfield stereomicroscopy. The Journal of Visualized Experiments, J Vis Exp. 2015 Jan 31;(95). doi: 10.3791/52654. PMID: 25742070. PMCID: PMC4330669.

Palopoli MF, Peden C, Woo C, Akiha K, Ary M, Cruze L, Anderson JL, Phillips PC..  Natural and experimental evolution of sexual conflict within Caenorhabditis nematodes.   BMC Evol Biol. 2015 May;15:93. PMID: 25994934.  PMCID: PMC4455605.

Palopoli MF, Fergus DJ, Minot S, Pei DT, Simison WB, Fernandez-Silva I, Thoemmes MS, Dunn RR, Trautwein M. Global divergence of the human follicle mite Demodex folliculorum: Persistent associations between host ancestry and mite lineages. Proc Natl Acad Sci U S A 2015 Dec. PMID: 26668374. PMCID: PMC4703014.

Pope WH, Bowman CA, Russell DA, Jacobs-Sera D, Asai DJ, Cresawn SG, Jacobs WR Jr, Hendrix RW, Lawrence JG, Hatfull GF, et al, SEA-PHAGE, PHIRE, Mycobacterial Genetics Course. (2015) Whole genome comparison of a large collection of mycobacteriophages reveals a continuum of bacteriophage genetic diversity. eLife (http://dx.doi.org/10.7554/elife.06416)
 PMCID: PMC4408529.

Soundararajan R, Stearns TM, Griswold AL, Mehta A, Czachor A, Fukumoto J, Lockey RF, King BL, Kolliputi N. Detection of canonical A-to-G editing events at 3′ UTRs and microRNA target sites in human lungs using next-generation sequencing. Oncotarget. 2015 6(34):35726-36.  PMID: 26486088. PMCID: PMC4742137.

Soto, I, Graham LC, Richter HJ, Simeone SN, Radell JE, Grabowska W, Funkhouser WK, Howell MC, Howell GR. APOE Stabilization by Exercise Prevents Aging Neurovascular Dysfunction and Complement Induction. PLoS Biol. 2015 October; 13(10): e1002279. Published online 2015 October 29. doi: 10.1371/journal.pbio.1002279  PMCID: PMC4626092.

Strome S, Updike D. Specifying and protecting germ cell fate. Nat Rev Mol Cell Biol. 2015 Jul;16(7):406-16. doi: 10.1038/nrm4009. Review. PubMed PMID: 26122616. PMCID: PMC4698964.

James E. Tarver, Mario dos Reis, Siavash Mirarab, Raymond J. Moran, Sean Parker, Joseph E. O’Reilly, Benjamin L. King, Mary J. O’Connell, Robert J. Asher, Tandy Warnow, Kevin J. Peterson, Philip C.J. Donoghue and Davide Pisani; ‘The Interrelationships of Placental Mammals and the Limits of Phylogenetic Inference’ Genome Biology and Evolution. PMID: 26733575 PMCID: PMC4779606.

Weatherly LM, Shim J, Hashmi HN, Kennedy RH, Hess ST, Gosse JA. Antimicrobial Agent Triclosan is a Proton Ionophore Uncoupler of Mitochondria in Living Rat and Human Mast Cells and in Primary Human Keratinocytes. Journal of Applied Toxicology 2015 Jul 23. PMID: 26204821. PMCID: PMC4724348.

Williams LM, Nivison CL, Ambrose WG Jr, Dobbin R, Locke WL 5th. Lack of adult novel northern lineages of invasive green crab <i>Carcinus maenas</i> along much of the northern US Atlantic coast. Marine ecology progress series. 2015;532:153-159. July 21 2015. PubMed PMID: 28127110; PubMed Central PMCID: PMC5260853.

Yu JC , Fox ZD, Crimp JL, Littleford HE, Jowdry AL and Jackman WR. Hedgehog signaling regulates dental papilla formation and tooth size during zebrafish odontogenesis. Developmental Dynamics 2015 Apr; 244: 577-590.  PMID: 25645398 PMCID: PMC4380796.

2014

Ahmad ST, Steinmetz S, Bussey H, Possidente B, Seggio J. Larval ethanol exposure alters free-running circadian rhythm and per Locus transcription in adult D. melanogaster period mutants. Behavioral Brain Research 2013;241: 50-55. PMID: 23219838. PMCID: PMC3552313 [Available on 2014/3/15].

Archambault L, Linscott J, Swerdlow N, Boyland K, Riley E, ¹Schlax P. Translational efficiency of rpoS mRNA from Borrelia burgdorferi: effects of the length and sequence of the mRNA leader region. Biochem Biophys Res Commun. 2013 Mar 29;433(1):73-8. PMID: 23454119. PMCID: PMC3616328 [Available on 2014/3/29].

Howard A, Rogers AN. Role of translation initiation factor 4G in lifespan regulation and age-related health. Ageing Res Rev. 2014 Jan;13:115-24. PubMed PMID: 24394551; PubMed Central PMCID: PMC3966135.

Ji W, Yang M, Praggastis A, Li Y, Zhou HJ, He Y, Ghazvinian R, Cincotta DJ, Rice KP, Min W. Carbamoylating activity associated with the activation of the anti tumor agent laromustine inhibits angiogenesis by inducing ASK1-dependent endothelial cell death. PLoS One. 2014;9(7):e103224. PubMed PMID: 25068797; PubMed Central PMCID: PMC4113355.

Tra V, Dube D. Glycoscience: Biology and Medicine. Japan: Springer; 2014. Chemical tools to detect and target Helicobacter pylori’s glycoproteins. 479-484p. N/A: Not Journal Yin V. The Physiology of Fishes. 4th edition ed. Evans D, Claiborne J, Currie S, editors. Florida: Taylor and Francis Group; 2014. Chapter 13, Cardiac Regeneration391-404, 453p.

Fidler AL, Vanacore RM, Chetyrkin SV, Pedchenko VK, Bhave G, Yin VP, Stothers CL,Rose KL, McDonald WH, Clark TA, Borza DB, Steele RE, Ivy MT, Aspirnauts, Hudson JK, Hudson BG. A unique covalent bond in basement membrane is a primordial innovation for tissue evolution. Proc Natl Acad Sci U S A. 2014 Jan 7;111(1):331-6. PubMed PMID: 24344311; PubMed Central PMCID: PMC3890831.

Branicky R, Miyazaki H, Strange K, Schafer WR. The voltage-gated anion channels encoded by clh-3 regulate egg laying in C elegans by modulating motor neuron excitability. J Neurosci. 2014 Jan 15;34(3):764-75. PubMed PMID: 24431435; PubMed Central PMCID: PMC3891957.

Coffman JA, Wessels A, DeSchiffart C, Rydlizky K. Oral-aboral axis specification in the sea urchin embryo, IV: hypoxia radializes embryos by preventing the initial spatialization of nodal activity. Dev Biol. 2014 Feb 15;386(2):302-7. PubMed PMID: 24384388; PubMed Central PMCID: PMC3929957.

Updike DL, Knutson AK, Egelhofer TA, Campbell AC, Strome S. Germ-granule components prevent somatic development in the C elegans germline. Curr Biol. 2014 May 5;24(9):970-5. PubMed PMID: 24746798; PubMed Central PMCID: PMC4036631.

Tra VN, Dube DH. Glycans in pathogenic bacteria–potential for targeted covalent therapeutics and imaging agents. Chem Commun (Camb). 2014 May 11;50(36):4659. PubMed PMID: 24647371; PubMed Central PMCID: PMC4049282.

Bavis RW, van Heerden ES, Brackett DG, Harmeling LH, Johnson SM, Blegen HJ, Logan S, Nguyen GN, Fallon SC. Postnatal development of eupneic ventilation and metabolism in rats chronically exposed to moderate hyperoxia. Respir Physiol Neurobiol. 2014 Jul 1;198:1-12. PubMed PMID: 24703970; PubMed Central PMCID: PMC4066817.

Chun RF, Blatter E, Elliott S, Fitz-Gibbon S, Rieger S, Sagasti A, Adams JS, Hewison M. Cloning of a functional 25-hydroxyvitamin D-1α-hydroxylase in zebrafish (Danio rerio). Cell Biochem Funct. 2014 Dec;32(8):675-82. PubMed PMID: 25290078; PubMed Central PMCID: PMC4363119.

Field DJ, Gauthier JA, King BL, Pisani D, Lyson TR, Peterson KJ. Toward consilience in reptile phylogeny: miRNAs support an archosaur, not lepidosaur, affinity for turtles. Evol Dev. 2014 Jul-Aug;16(4):189-96. PubMed PMID: 24798503; PubMed Central PMCID: PMC4215941.

Stone JL, VanWyk EJ, Hale JR. Transmission advantage favors selfing allele in experimental populations of self-incompatible Witheringia solanacea (solanaceae).Evolution. 2014 Jul;68(7):1845-55. PubMed PMID: 24713065; PubMed Central PMCID: PMC4079751.

Kohorn BD, Kohorn SL, Saba NJ, Martinez VM. Requirement for pectin methyl esterase and preference for fragmented over native pectins for wall-associated kinase-activated, EDS1/PAD4-dependent stress response in Arabidopsis. J Biol Chem. 2014 Jul 4;289(27):18978-86. PubMed PMID: 24855660; PubMed Central PMCID: PMC4081937.

Bennett RJ, Forche A, Berman J. Rapid mechanisms for generating genome diversity: whole ploidy shifts, aneuploidy, and loss of heterozygosity. Cold Spring Harb Perspect Med. 2014 Jul 31;4(10)PubMed PMID: 25081629; PubMed Central PMCID: PMC4200206.

Maginnis MS, Nelson CD, Atwood WJ. JC polyomavirus attachment, entry, and trafficking: unlocking the keys to a fatal infection. J Neurovirol. 2014 Jul 31;PubMed PMID: 25078361; PubMed Central PMCID: PMC4312552.

Bing X, Rzezniczak TZ, Bateman JR, Merritt TJ. Transvection-based gene regulation in Drosophila is a complex and plastic trait. G3 (Bethesda). 2014 Sep 11;4(11):2175-87. PubMed PMID: 25213691; PubMed Central PMCID: PMC4232543.

Shaw JR, Hampton TH, King BL, Whitehead A, Galvez F, Gross RH, Keith N, Notch E, Jung D, Glaholt SP, Chen CY, Colbourne JK, Stanton BA. Natural selection canalizes expression variation of environmentally induced plasticity-enabling genes. Mol Biol Evol. 2014 Nov;31(11):3002-15. PubMed PMID: 25158801; PubMed Central PMCID: PMC4209136.

Wartenberg A, Linde J, Martin R, Schreiner M, Horn F, Jacobsen ID, Jenull S, Wolf T, Kuchler K, Guthke R, Kurzai O, Forche A, d’Enfert C, Brunke S, Hube B. Microevolution of Candida albicans in macrophages restores filamentation in a nonfilamentous mutant.PLoS Genet. 2014 Dec;10(12):e1004824. PubMed PMID: 25474009; PubMed Central PMCID: PMC4256171.

Palopoli MF, Minot S, Pei D, Satterly A, Endrizzi J. Complete mitochondrial genomes of the human follicle mites Demodex brevis and D folliculorum: novel gene arrangement,truncated tRNA genes, and ancient divergence between species. BMC Genomics. 2014 Dec 16;15:1124. PubMed PMID: 25515815; PubMed Central PMCID: PMC4320518.

Prentiss NK, Vasileiadou K, Faulwetter S, Arvanitidis C, Hove HA. A new genus and species of Serpulidae (Annelida, Polychaeta, Sabellida) from the Caribbean Sea. Zootaxa. 2014 Dec 22;3900(2):204-22. PubMed PMID: 25543733; NIHMSID: 663724.

Rieger S, Zhao H, Martin P, Abe K, Lisse TS. The role of nuclear hormone receptors in cutaneous wound repair. Cell Biochem Funct. 2015 Jan;33(1):1-13. doi: 10.1002/cbf.3086. Epub 2014 Dec 22. Review. PubMed PMID: 25529612; PubMed Central PMCID: PMC4357276.

2013

Bateman JR, Palopoli MF, *Dale ST, *Stauffer JE, *Shah AL, *Johnson JE, *Walsh CW, *Flaten H, *Parsons CM. Captured segment exchange: a strategy for custom engineering large genomic regions in Drosophila melanogaster. Genetics 2013 Feb;193(2):421-30. PMID: 23150604. PMCID: PMC3567733.

Bavis RW, *Fallon SC, Dmitrieff EF. Chronic hyperoxia and the development of the carotid body. Respir Physiol Neurobiol. 2013;185: 94-104. PMID: 22640932. PMCID: PMC3448014.

Davis AP, Murphy CG, Johnson R, Lay JM, Lennon-Hopkins K, Saraceni-Richards C, Sciaky D, King BL, Rosenstein MC, Wiegers TC, Mattingly CJ. The Comparative Toxicogenomics Database: update 2013. Nucleic Acids Res. 2013 41(D1):D1104-14. PMID: 23093600. PMCID: PMC3531134.

Lisse TS, Chun RF, ¹Rieger S, Adams JS, Hewison M: Vitamin D activation of functionally distinct regulatory miRNAs in primary human osteoblasts. J Bone Miner Res. 2013 Jun;28(6):1478-88.PMID: 23362149. PMCID: PMC3663893 [Available on 2014/6/1].

Marakalala MJ, Vautier S, Potrykus J, Walker LA, Shepardson KM, Hopke A, Mora-Montes HM, Kerrigan A, Netea MG, Murray GI, MacCallum D M, ¹Wheeler R, Munro CA, Gow NAR, Cramer RA, Brown AJ, Brown GD. Differential adaptation of Candida albicans in vivo modulates immune recognition by Dectin-1. PLoS Pathogens 2013 Apr;9(4):e1003315. PMID: 23637604. PMCID: PMC3630191.

Naing SH, *Parvez S, *Pender-Cudlip M, Groves JT, Austin RN. Substrate specificity and reaction mechanism of purified alkane hydroxylase from the hydrocarbonoclastus bacterium Alcanivorax borkumensis (AbAlkB). Journal of Inorganic Biochemistry 2013 Apr;121:46-52. PMID: 23337786. PMCID: PMC3595352 [Available on 2014/4/1].

Williams AH, Kwiatkowski MA, Mortimer AL, Marder E, Zeeman ML, Dickinson PS. Animal-to-animal variability in the phasing of the crustacean cardiac motor pattern: an experimental and computational analysis. J Neurophysiology 2013 May;109(10):2451-65. PMID: 23446690. PMCID: PMC3653045 [Available on 2014/5/15].

Yamada T, Bhate MP, Strange K. Regulatory phosphorylation induces extracellular conformational changes in a CLC anion channel. Biophys J. 2013 May 7;104(9):1893-904. PMID: 23663832. PMCID: PMC3647193 [Available on 2014/5/7].

Harris LJ, Martinez SA, Keyser BR, Dyer WE, Johnson RR. Functional analysis of TaABF1 during abscisic acid and gibberellin signalling in aleurone cells of cereal grains.Seed Sci Res. 2013 Jun;23(2):89-98. PubMed PMID: 24578593; PubMed CentralPMCID: PMC3933958.

St Laurent R, Helm SR, Glenn MJ. Reduced cocaine-seeking behavior in heterozygous BDNF knockout rats. Neurosci Lett. 2013 Jun 7;544:94-9. PubMed PMID: 23583595;PubMed Central PMCID: PMC3773519.

St Laurent R, O’Brien LM, Ahmad ST. Sodium butyrate improves locomotor impairment and early mortality in a rotenone-induced Drosophila model of Parkinson’s disease. Neuroscience. 2013 Aug 29;246:382-90. PubMed PMID: 23623990; PubMed Central. PMCID: PMC3721507.

McCarty CM, Coffman JA. Developmental cis-regulatory analysis of the cyclin D gene in the sea urchin Strongylocentrotus purpuratus. Biochem Biophys Res Commun. 2013 Oct 25;440(3):413-8. PubMed PMID: 24090975; PubMed Central PMCID: PMC3871186.

Millard JT, Chuang E, Lucas JS, Nagy EE, Davis GT. Case-Study Investigation of Equine Maternity via PCR-RFLP: A Biochemistry Laboratory Experiment. J Chem Educ. 2013 Nov 12;90(11)PubMed PMID: 24363455; PubMed Central PMCID: PMC3867210.

2012

Bateman JR, Johnson JE, *Locke MN. Comparing enhancer action in cis and in trans. Genetics 2012a;191: 1143-1155. PubMed PMID: 22649083. PMCID: PMC3415998.

Bateman JR,Larschan E,D’Souza R, *Marshall LS, Dempsey KE, Johnson JE, Mellone BG, Kuroda MI. A genome-wide screen identifies genes that affect somatic homolog pairing in Drosophila. G3: Genes, Genomes, Genetics 2012b;2: 731-740. PMID: 22870396. PMCID: PMC3385979.

Brothers K, ¹Wheeler RT. Non-invasive imaging of zebrafish larvae as a model of disseminated candidiasis. Journal of Visualized Experiments 2012;30(65):pii 4051. PMID: 22872032. PMCID: PMC3468152.

Carey CC, Ewing HA, Cottingham KL, Weathers KC, Thomas RQ, and Haney JF. Occurrence and toxicity of the cyanobacterium Gloeotrichia echinulata for low nutrient lakes in the northeastern United States.  Aquatic Ecology 46:395-409, 2012.

Christie AE, Nolan DH, *Garcia ZA, McCoole MD, Harmon SM, Congdon-Jones B, Ohno P, Hartline N, Congdon CB, Baer KN, Lenz PH. Bioinformatic prediction of arthropod/nematode-like peptides in non-arthropod, non-nematode members of the Ecdysozoa. Gen Comp Endocrinol. 2011 Feb 1;170(3):480-6. PubMed PMID: 21074533. NIHMS: 252649.

Collin GB, Marshall JD, King BL, Milan G, Maffei P, Jagger DJ, Naggert JK. The Alström syndrome protein, ALMS1, interacts with α-actinin and components of the endosome recycling pathway. PLoS One 2012;7(5):e37925. PMID: 22693585. PMCID: PMC3365098.

Corriveau JA, ¹Glenn MJ. Postnatal choline levels mediate cognitive deficits in a rat model of schizophrenia. Pharmacology, Biochemistry, & Behavior 2012;103:60-68. PMID: 22917834. PMCID: PMC3537899.

Cutler CP, Harmon S, Walsh J, Burch K. Characterization of aquaporin 4 protein expression and localization in tissues of the dogfish (Squalus acanthias). Front Physiol. 2012;3:21. PMID: 22363294. PMCID: PMC3279706.

Cutler CP, MacIver B, Cramb G, Zeidel M. Aquaporin 4 is a ubiquitously expressed isoform in the dogfish (Squalus acanthias) shark. Front Physiol. 2011;2:107. PMID: 22291652. PMCID: PMC3254168.

Dmitrieff EF, *Piro SE, *Broge TA Jr., *Dunmire KB, Bavis RW. Carotid body growth during chronic postnatal hyperoxia. Respir Physiol Neurobiol. 2012;180: 193-203. PMID: 22138179. PMCID: PMC3273607.

Glenn MJ, *Adams RS, *McClurg L. Supplemental dietary choline during development exerts antidepressant-like effects in adult female rats. Brain Research 2012;1443: 52-63. PMID: 22305146. PMCID: PMC3327365.

Goodson JL, Kelly AM, Kingsbury MA, Thompson RR. An aggression-specific cell type in the anterior hypothalamus of finches. Proc Natl Acad Sci USA. 2012;109(34):13847-52. PMID:22872869. PMCID: PMC3427066.

King BL, Davis AP, Rosenstein MC, Wiegers TC, Mattingly CJ. Ranking transitive chemical-disease inferences using local network topology in the comparative toxicogenomics database. PLoS One 2012;7(11):e46524. PMID: 23144783. PMCID: PMC3492369.

Lee E, Strange K. GCN-2 dependent inhibition of protein synthesis activates osmosensitive gene transcription in C. elegans via WNK and Ste20 kinase signaling. Am. J. Physiol. (Cell Physiol.) 2012 Dec;303(12):C1269-77. PMID: 23076791. PMCID: PMC3532491 [Available on 2013/12/15].

Lehmann H, *Rourke BK, *Booker A, ¹Glenn MJ. Single session contextual fear conditioning remains dependent on the hippocampus despite an increase in the number of context-shock pairings during learning. Neurobiology of Learning and Memory 2012 Nov 7; PMID: 23142771.

Liang X, Da Paula AC, Bozóky Z, Zhang H, Bertrand CA, Peters KW, Forman-Kay JD, Frizzell RA. Phosphorylation-dependent 14-3-3 protein interactions regulate CFTR biogenesis. Mol Biol Cell. 2012 Mar;23(6):996-1009. PMID: 22278744. PMCID: PMC3302758.

McCoole M, *Atkinson N, *Graham D, *Grasser E, *Joselow A, *McCall N, *Welker A, *Wilsterman Jr E, *K. Baer, Tilden A, Christie A. Genomic analyses of aminergic signaling systems (dopamine, octopamine and serotonin) in Daphnia pulex. Comp Biochem Physiol D: Genomics Proteomics 2012 Mar;7; 7(1):35-58. PMID: 22137767. NIHMSID: 336880.

Meredith M, *Parry E, Guay J, *Markham N, Danner GR, Johnson K, Barkay T, Fekete F. Concomitant antibiotic and mercury resistance among gastrointestinal microflora of feral brook trout, Salvelinus fontinalis. Current Microbiology 2012;65: 575-582. PMID: 22850694. NIHMS: 442546.

Millard J, *McGowan E, *Bradley S. Diepoxybutane interstrand cross-links induce DNA bending.   Biochimie 2012;94: 574-577. PMID: 21839139. PMCID: PMC3236281.

Miyazaki H, Yamada T, Parton A, Morrison R, Kim S, Beth AH, Strange K. CLC anion channel regulatory phosphorylation and conserved signal transduction domains. Biophys J. 2012 Oct 17;103(8):1706-18. PMID: 23083714. PMCID: PMC3475328 [Available on 2013/10/17].

Miyazaki H, Strange K. Differential regulation of a CLC anion channel by SPAK kinase ortholog-mediated multisite phosphorylation. Am J Physiol Cell Physiol. 2012 Jun 15;302(12):C1702-12. PMID: 22357738. PMCID: PMC3378076 [Available on 2013/6/15].

Jiménez-López C, Collette JR, Brothers KM, Shepardson KM, Cramer RA, ¹Wheeler RT, Lorenz MC. Candida albicans induces arginine biosynthetic genes in response to host-derived reactive oxygen species. Eukaryotic Cell 2012 9 November;10.1128/EC.00290-12. PMID: 23143683. PMCID: PMC3535846.

Jung D, MacIver B, Jackson BP, Barnaby R, Sato JD, Zeidel ML, Shaw JR, Stanton BA. A novel aquaporin 3 in killifish (Fundulus heteroclitus) is not an arsenic channel. Toxicol Sci. 2012 May;127(1):101-9. PMID: 22323512. PMCID: PMC3327866.

Koeppen K, Chapline C, Sato JD, Stanton BA. Nedd4-2 does not regulate wt-CFTR in human airway epithelial cells. Am J Physiol Lung Cell Mol Physiol. 2012 Oct 15;303(8):L720-7. Epub 2012 Aug 17. PMID: 22904170. PMCID: PMC3469630 [Available on 2013/10/15].

Kohorn BD, Kohorn SL, *Todorova T, Baptiste G, Stansky K, McCullough M. A dominant allele of Arabidopsis pectin-binding wall-associated kinase induces a stress response suppressed by MPK6 but not MPK3 mutations. Mol Plant. 2012;5(4):841-51. PMID: 22155845. PMCID: PMC3399699 [Available on 2013/7/19].

Kohorn BD, Kohorn SL.  The cell wall associated kinases, WAKs, as pectin receptors. Frontiers in Plant Science 2012;3:88, 1-4. PMID: 22639672. PMCID: PMC3355716.

Lenz PH, Unal E, Hassett RP, Smith CM, Bucklin A, Christie AE, Towle DW. Functional genomics resources for the North Atlantic copepod, Calanus finmarchicus: EST database and physiological microarray. Comp Biochem Physiol Part D Genomics Proteomics 2012 Jun;7(2):110-23. Epub 2011 Dec 29. PMID: 22277925. NIHMSID: 346755. PMCID: PMC3586334.

Lyson TR, Sperling EA, Heimberg AM, Gauthier JA, King BL, Peterson KJ. MicroRNAs support a turtle + lizard clade. Biol Lett. 2012;8(1):104-7. PMID: 21775315. PMCID: PMC3259949.

Notch EG, Chapline C, Flynn E, *Lameyer T, *Lowell A, Sato JD, Shaw JR, Stanton BA. Mitogen activated protein kinase 14-1 regulates serum glucocorticoid kinase 1 during seawater acclimation in Atlantic killifish, Fundulus heteroclitus. Comp Biochem and Physiol – Part A: Mol & Integr Physiol. 2012 Aug;162(4):443-8. Epub 2012 May 2. PMID: 22575607. PMCID: PMC3365625.

Rice KP, Klinkerch EJ, Gerber SA, *Schleicher TR, Kraus TJ, *Buros CM. Thioredoxin reductase is inhibited by the carbamoylating activity of the anticancer sulfonylhydrazine drug Laromustine Mol Cell Biochem. 2012;370:199-207. PMID: 22864532. PMCID: PMC3469748 [Available on 2013/11/1].

Stone J, *Crystal P, *Devlin E, Downer R, Cameron D. Highest genetic diversity at the northern range limit of the rare orchid Isotria medeoloides. Heredity 2012;109: 215-221. PMID: 22692268. PMCID: PMC3464020 [Available on 2013/10/1].

Seritrakul P, Samarut E, *Lama TS, Gilbert Y, Laudet V, ¹Jackman WR. Retinoic acid expands the evolutionarily-reduced dentition of zebrafish. The FASEB Journal 2012;26: 5014-5024. PMID: 22942074. PMCID: PMC3509061.

Sun FF, Johnson JE, Zeidler MP, ¹Bateman JR. Simplified insertion of transgenes onto balancer chromosomes via recombinase-mediated cassette exchange. G3 (Bethesda) 2012;2: 551-553. PMID: 22670225. PMCID: PMC3362938.

Tobin DM, May RC, ¹Wheeler RT. Zebrafish: a see-through host and a fluorescent toolbox to probe host-pathogen interaction. PLoS Pathogens 2012;8(1):e1002349, PMID: 22241986. PMCID: PMC3252360.

Tossidou I, Niedenthal R, Klaus M, Teng B, Worthmann K, King BL, Peterson KJ, Haller H, Schiffer M. CD2AP regulates SUMOylation of CIN85 in podocytes. Mol Cell Biol. 2012;32(6):1068-79. PMID: 22203040. PMCID: PMC3295011.

Walker MB, King BL, Paigen K. Clusters of ancestrally related genes that show paralogy in whole or in part are a major feature of the genomes of humans and other species. PLoS One 2012;7(4):e35274. PMID: 22563380. PMCID: PMC3338513.

Wang Q, Arighi CN, King BL, Polson SW, Vincent J, Chen C, Huang H, Kingham BF, Page ST, Rendino MF, Thomas WK, Udwary DW, Wu CH; North East Bioinformatics Collaborative Curation Team. Community annotation and bioinformatics workforce development in concert–Little Skate Genome Annotation Workshops and Jamborees. Database (Oxford) 2012;2012:bar064. PMID: 22434832. PMCID: PMC3308154.

Wiwatpanit T, Powers B, Dickinson PS. Inter-animal variability in the effects of C-type allatostatin on the cardiac neuromuscular system in the lobster Homarus americanus. The Journal of Experimental Biology 2012;215, 2308-2318. PMID: 22675192. PMCID: PMC3368622.

Yin VP, Lepilina A, Smith A, Poss KD. Regulation of zebrafish heart regeneration by miR-133. Dev Biol. 2012 May 15;365(2):319-27. Epub 2012 Feb 20. PMID: 22374218. PMCID: PMC3342384.