KEY:
† or ¹ denotes INBRE project leader
* denotes an INBRE-funded undergraduate student

2021

DeLaney K, Hu M, Hellenbrand T, Dickinson PS, Nusbaum MP, Li L. Mass Spectrometry Quantification, Localization, and Discovery of Feeding-Related Neuropeptides in Cancer borealis. ACS chemical neuroscience. 2021 February 1. PubMed PMID: 33522802.

Mayberry CL, Wilczek MP, Fong TM, Nichols SL, Maginnis MS†. GRK2 mediates -arrestin interactions with 5-HT(2) receptors for JC polyomavirus endocytosis. J Virol. 2021 Jan 13:JVI.02139-20. doi: 10.1128/JVI.02139-20. Online ahead of print. PMID: 33441347.

Sant KE, Moreau HM, Williams LM†, Jacobs HM, Bowsher AM, Boisvert JD, Smolowitz RM, Pantazis J, Annunziato K, Nguyen M, Timme-Laragy A. Embryonic exposures to mono-2-ethylhexyl phthalate induce larval steatosis in zebrafish independent of Nrf2a signaling. J Dev Orig Health Dis. 2021 Feb;12(1):132-140. doi: 10.1017/S2040174420000057. Epub 2020 Feb 17. PMID: 32063256. PMCID: PMC7429360.

Goudeau Jérôme, Catherine S. Sharp , Jonathan Paw , Laura Savy , Manuel D. Leonetti, Andrew G. York , Dustin L. Updike , Cynthia Kenyon , and Maria Ingaramo. Split-wrmScarlet and split-sfGFP: Tools for faster, easier fluorescent labeling of endogenous proteins in Caenorhabditis elegans. Genetics, DOI: 10.1093/genetics/iyab014. Feb 2, 2021. PMID: 33693628.

2020

Bavis* RW, Song MJ , Smachlo JP ,Hulse A ,Kenison HR ,Peralta JN , Place JT ,Triebwasser S ,Warden SE , McDonough AB. Ventilatory and carotid body responses to acute hypoxia in rats exposed to chronic hypoxia during the first and second postnatal weeks. Respir Physiol Neurobiol. 2020 Jan 29;:103400. doi: 10.1016/j.resp.2020.103400. [Epub ahead of print] PubMed PMID: 32006667; NIHMSID:NIHMS1556884

Horch HW, Spicer S, Low IIC, Joncas C, Quenzer E, Okoya H,  Ledwidge LM, Fisher H Characterization of plexinA  and two distinct semaphorin1a  transcripts in the developing and adult cricket Gryllus bimaculatus.  J Comp Neurol. 2020; 528(4):687-702. PMID: 31621906. PMCID: PMC6944777

Olins AL, Gould TJ, Boyd L, Sarg B, Olins DE. Hyperosmotic stress: in situ chromatin phase separation. Nucleus. 2020 Dec;11(1):1-18. doi: 10.1080/19491034.2019.1710321. PubMed PMID: 31924112; PubMed Central PMCID: PMC6973338.

Besen-McNally R, Gjelsvik KJ, Losick VP. Wound-induced polyploidization is dependent on integrin-yki signaling. Biol Open. 2020 Dec 22:bio.055996. doi: 10.1242/bio.055996. PMID: 33355119.

Blaszkiewicz M, Wood E, Koizar S, Willows J, Anderson R, Tseng YH, Godwin J, Townsend KL. The involvement of neuroimmune cells in adipose innervation. Mol Med. 2020 Dec 9;26(1):126. doi: 10.1186/s10020-020-00254-3. PMID: 33297933. PMCID: PMC7727151.

Christie AE, Hull JJ, Dickinson PS. Assessment and comparison of putative amine receptor complement/diversity in the brain and eyestalk ganglia of the lobster, Homarus americanus. Invert Neurosci. 2020 Mar 26;20(2):7. doi: 10.1007/s10158-020-0239-5. PMID: 32215729. PMCID: PMC7327442.

Christie AE, Hull JJ, Dickinson PS. In silico analyses suggest the cardiac ganglion of the lobster, Homarus americanus, contains a diverse array of putative innexin/innexin-like proteins, including both known and novel members of this protein family. Invert Neurosci. 2020 Mar 2;20(2):5. doi: 10.1007/s10158-020-0238-6. PMID: 32115669. PMCID: PMC7310867.

Christie AE, Rivera CD*, Call CM*,  Dickinson PS*, Stemmler EA, Hull JJ. 2020. Multiple transcriptome mining coupled with tissue specific molecular cloning and mass spectrometry provide insights into agatoxin-like peptide conservation in decapod crustaceans. Gen Comp Endocrinol. 2020, Dec 1;299:113609. doi: 10.1016/j.ygcen.2020.113609. PMID: 32916171. PMCID: PMC7747469.

Cirrincione AM, Pellegrini AD, Dominy JR, Benjamin ME, Utkina-Sosunova I, Lotti F, Jergova S, Sagen J, Rieger S. Paclitaxel-induced peripheral neuropathy is caused by epidermal ROS and mitochondrial damage through conserved MMP-13 activation. Sci Rep. 2020 Mar 4;10(1):3970. doi: 10.1038/s41598-020-60990-8. PMID: 32132628. PMCID: PMC7055229.

Engevik MA, Banks LD, Engevik KA, Chang-Graham AL, Perry JL, Hutchinson DS, Ajami NJ, Petrosino JF, Hyser JM. Rotavirus infection induces glycan availability to promote ileum-specific changes in the microbiome aiding rotavirus virulence. Gut Microbes. 2020 Sep 2;11(5):1324-1347. doi: 10.1080/19490976.2020.1754714. Epub 2020 May 13. PMID: 32404017. PMCID: PMC7524290.

Gans I, Hartig EI, Zhu S, Tilden AR, Hutchins LN*, Maki NJ*, Graber JH*, Coffman JA. Klf9 is a key feedforward regulator of the transcriptomic response to glucocorticoid receptor activity. Sci Rep. 2020 Jul 10;10(1):11415. doi: 10.1038/s41598-020-68040-z. PMID: 32651405. PMCID: PMC7351738.

Greer CB, Wright J, Weiss JD, Lazerenko RM, Moran SP, Zhu J, Chronister KS, Jin AY, Kennedy* AJ, Sweatt JD, Kaas GA. Tet1 isoforms differentially regulate gene expression, synaptic transmission and memory in the mammalian brain. The Journal of neuroscience : the official journal of the Society for Neuroscience. 2020:JN-RM-1821-20. doi: 10.1523/JNEUROSCI.1821-20.2020. PubMed PMID: 33262245. PMC7842754.

Hartig EI, Zhu S, King BL, Coffman JA. Chronic cortisol exposure in early development leads to neuroendocrine dysregulation in adulthood. BMC Res Notes . 2020;13(1):366. doi:10.1186/s13104-020-05208-w. PMID: 32746894, PMCID: PMC7398215.

Heissenberger C, Rollins JA, Krammer TL, Nagelreiter F, Stocker I, Wacheul L, Shpylovyi A, Tav K, Snow S, Grillari J, Rogers AN, Lafontaine DLJ, Schosserer M. The ribosomal RNA m(5)C methyltransferase NSUN-1 modulates healthspan and oogenesis in Caenorhabditis elegans. Elife. 2020 Dec 8;9:e56205. doi: 10.7554/eLife.56205. PMID: 33289480 PMCID: PMC7746234.

Hudson R*, de Graaf R , Strandoo Rodin M, Ohno A, Lane N, McGlynn SE, Yamada YMA, Nakamura R, Barge LM, Braun D, Sojo V. CO2 reduction driven by a pH gradient. Proc Natl Acad Sci U S A. 2020 Sep 15;117(37):22873-22879. doi: 10.1073/pnas.2002659117. Epub 2020 Sep 8. PMID: 32900930; PMCID: PMC7502746.

Hull JJ, Stefanek MA , Dickinson PS*, Christie AE. Cloning of the first cDNA encoding a putative CCRFamide precursor identification of the brain, eyestalk ganglia, and cardiac ganglion as sites of CCRFamide expression in the American lobster, Homarus americanus.  Invert Neurosci. 2020 Nov 26;20(4):24. doi: 10.1007/s10158-020-00257-z. PMID: 33244646. PMCID: PMC7784615.

Lee SD, Liu HY, Graber JH*, Heller-Trulli D, Kaczmarek Michaels K, Cerezo JF, Moore CL. Regulation of the Ysh1 endonuclease of the mRNA cleavage/polyadenylation complex by ubiquitin-mediated degradation. RNA Biol. 2020 May;17(5):689-702. doi: 10.1080/15476286.2020.1724717. Epub 2020 Feb 12. PMID: 32009536. PMC7237158.

Moulton KD,  Adewale AP , Carol HA ,Mikami SA , and Dube DH. Metabolic glycan labeling-based screen to identify bacterial glycosylation genes. ACS Infect Dis. 2020 Dec 11;6(12):3247-3259. doi: 10.1021/acsinfecdis.0c00612. PMID: 33186014. PMCID: PMC7808405.

Oleisky ER, Stanhope ME* , Hull JJ, Christie AE, Dickinson PS*. 2020. Differential neuropeptide modulation of premotor and motor neurons in the lobster cardiac ganglion. J Neurophysiol. 124(4):1241-1256. doi: 10.1152/jn.00089.2020. Epub 2020 Aug 5. PMID: 32755328. PMCID: PMC7654637.

Robledo RF, Ciciotte SL, Graber JH*, Zhao Y, Lambert AJ, Gwynn B, Maki NJ*, Brindley EC, Hartman E, Blanc L, Peters LL. Differential effects of RASA3 mutations on hematopoiesis are profoundly influenced by genetic background and molecular variant. PLoS Genet. 2020 Dec 28;16(12):e1008857. doi: 10.1371/journal.pgen.1008857. eCollection 2020 Dec. PMID: 33370780. PMCID: PMC7793307.

Sangroula S, Baez Vasquez AY, Raut P, Obeng B, Shim JK, Bagley GD, West BE, Burnell JE, Kinney MS, Potts CM, Weller SR, Kelley JB, Hess ST, Gosse JA. Triclosan disrupts immune cell function by depressing Ca(2+) influx following acidification of the cytoplasm. Toxicol Appl Pharmacol. 2020 Oct 15;405:115205. doi: 10.1016/j.taap.2020.115205. Epub 2020 Aug 21. PMID: 32835763. PMCID: PMC7566221.

Teif VB, Gould* TJ, Clarkson CT, Boyd L, Antwi EB, Ishaque N, Olins AL, Olins DE. Linker histone epitopes are hidden by in situ higher-order chromatin structure. Epigenetics & Chromatin 2020 Jun 6;13(1):26. PMID: 32505195.PMCID: PMC7276084.

Bailey EC, Dehn AS, Gjelsvik KJ, Besen-McNally R, Losick VP. A Drosophila Model to Study Wound-induced Polyploidization. J Vis Exp. 2020 Jun 9;(160). doi: 10.3791/61252. PMID: 32597839.

Bernacki LE, Kilpatrick CW. Structural Variation of the Turtle Mitochondrial Control Region. J Mol Evol. 2020 Sep;88(7):618-640. doi: 10.1007/s00239-020-09962-0. Epub 2020 Aug 18. PMID: 32808073.

Cheema MS, Good KV, Kim B, Soufari H, OSullivan C, Freeman ME, Stefanelli G, Casas CR, Zengeler KE , Kennedy* AJ, Lopez JME, Howard PL, Zovkic IB, Shabanowitz J, Dryhurst DD, Hunt DF, Mackereth CD, Ausió J. Deciphering the Enigma of the Histone H2A.Z-1/H2A.Z-2 Isoforms: Novel Insights and Remaining Questions. Cells. 2020;9(5):1167. doi: 10.3390/cells9051167. PubMed PMID: PMID: 32397240. PMCID: PMC7290884.

Kenny NJ, Francis WR, Rivera-Vicéns RE, Jurval K, de Mendoza A, Díez-Vives C, Lister R, Bezares-Calderon L, Grombacher L, Roller M, Barlow LD, Camilli S , Ryan JF, Wöheide G, Hill AL, Riesgo A, Leys SP. Tracing animal genomic evolution with the chromosomal-level assembly of the freshwater sponge Ephydatia muelleri. Nature Communications 2020 July 27;11(1): 3676. PMID: 32719321. PMCID: PMC7385117.

Snow S , Bacon E , Bergeron J , Katzman D , Wilhelm A , Lewis O , Syangtan D , Calkins A, Archambault L, Anacker ML, Schlax PJ. Transcript decay mediated by RNase III in Borrelia burgdorferi. Biochemical and Biophysical Research Communications 2020 Aug 20;529(2):386-391. PMID: 32703440. PMCID: PMC7427566.

Ewing HA, Weathers KC, Cottingham KL, Leavitt PR, Greer ML, Carey CC, Steele BG, Fiorillo AU , Sowles JP . New cyanobacterial blooms are not new: two centuries of lake production are related to ice cover and land use. Ecosphere 2020 Jun 17;11(6):e03170.

2019

B Assis A, Bevier CR*, Barreto CC, Navas CA. Environmental influences on and antimicrobial activity of the skin microbiota of Proceratophrys boiei  (Amphibia, Anura) across forest fragments. 2019 Ecology and Evolution PMID: 32015853. PMCID: PMC6988551

Barry SK ., Nakamura T, Matsuoka Y, Straub C, Horch, HW, Extavour CG. . Injecting Gryllus bimaculatus  eggs. J. Vis. Exp.   2019 Aug 22;(150), e59726, doi:10.3791/59726. PMID: 31498320 PMCID: PMC6944197.

Bateman JR* , Anderson DJ. Taming the giant within. PLoS Genet. 2019 May 9;15(5):e1008098. doi: 10.1371/journal.pgen.1008098. eCollection 2019 May. PMID: 31071083. PMCID: PMC6508613.

Breton TS, Prentiss NK. Metal stress-related gene expression patterns in two marine invertebrates, Hediste diversicolor (Annelida, Polychaeta) and Littorina littorea (Mollusca, Gastropoda), at a former mining site. Comparative Biochemistry and Physiology Part C: Toxicology and Pharmacology 2019 Aug; 225: 108588. PMID: 31400476 PMCID: PMC6744975.

Coffman JA* , Su YH. Redox regulation of development and regeneration. Curr Opin Genet Dev. Review. 2019 Aug;57:9-15. doi: 10.1016/j.gde.2019.06.002. Epub 2019 Jul 11. PMID: 31302472.

Dickinson PS*, Samuel HM , Stemmler EA, Christie AE. SIFamide peptides modulate cardiac activity differently in two species of Cancer crab. Gen Comp Endocrinol. 2019. 282:113204. doi: 10.1016/j.ygcen.2019.06.008. PMID: 31201801. PMCID: PMC6719312.

Gibert Y, Samarut E, Ellis MK, Jackman WR, Laudet V. The first formed tooth serves as a signalling centre to induce the formation of the dental row in zebrafish. Proc Biol Sci. 2019 Jun 12; 286(1904):20190401. doi: 10.1098/rspb.2019.0401. PMID: 31185860. PMCID: PMC6571473.

Grendler J, Lowgren S, Mills M, Losick VP. Wound-induced polyploidization is driven by Myc and supports tissue repair in the presence of DNA damage. Development. 2019 Aug 2;146(15). pii: dev173005. doi: 10.1242/dev.173005. PMID: 31315896. PMCID: PMC6703715.

King T , Johnson JE and Bateman JR. Position effects influence transvection in Drosophila melanogaster.  Genetics. 2019 Dec;213(4):1289-1299 PMID: 31611231. PMCID: PMC6893391.

Li Q, Philip VM, Stearns TM, Bubier JA, King BL, Low BE, Wiles MV, Saeidian AH, Sundberg BA, Uitto J, Sundberg JP. Quantitative Trait Locus and Integrative Genomics Revealed Candidate Modifier Genes for Ectopic Mineralization in Mouse Models of Pseudoxanthoma Elasticum. J Invest Dermatol . 2019 Dec;139(12):2447-2457.e7. PMID: 31207231; PMCID: PMC6874750.

Mahringer A, Bernd A, Miller DS, Fricker G. Aryl hydrocarbon receptor ligands increase ABC transporter activity and protein expression in killifish (Fundulus heteroclitus) renal proximal tubules. Biol Chem. 2019 Sep 25;400(10):1335-1345. doi: 10.1515/hsz-2018-0425. PMID: 30913027.

Marnik EA, Fuqua JH, Sharp CS, Rochester JD, Xu EL, Holbrook SE, Updike DL. Germline Maintenance Through the Multifaceted Activities of GLH/Vasa in Caenorhabditis elegans P Granules. Genetics. 2019 Nov;213(3):923-939. doi: 10.1534/genetics.119.302670. Epub 2019 Sep 10. PMID: 31506335. PMCID: PMC6827368.

Reed KJ, Svendsen JM, Brown KC, Montgomery BE, Marks TN, Vijayasarathy T, Parker DM, Nishimura EO, Updike DL*, Montgomery TA. Widespread roles for piRNAs and WAGO-class siRNAs in shaping the germline transcriptome of Caenorhabditis elegans. Nucleic Acids Res. 2019 Dec 24. pii: gkz1178. doi: 10.1093/nar/gkz1178. [Epub ahead of print] PMID: 31872227.

Rollins JA, Shaffer D, Snow SS, Kapahi P, Rogers AN. Dietary restriction induces posttranscriptional regulation of longevity genes. Life Sci Alliance. 2019 Jun 28;2(4). pii: e201800281. doi: 10.26508/lsa.201800281. Print 2019 Aug. PMID: 31253655. PMCID: PMC6600014.

Shim JK, Caron MA, Weatherly LM, Gerchman LB, Sangroula S, Hattab S, Baez AY, Briana TJ, Gosse JA*. Antimicrobial agent triclosan suppresses mast cell signaling via phospholipase D inhibition. J Appl Toxicol. 2019 Dec;39(12):1672-1690. doi: 10.1002/jat.3884. Epub 2019 Aug 19. PMID: 31429102. PMCID: PMC6861621.

Skelly DA, Raghupathy N, Robledo RF, Graber JH, Chesler EJ. Reference Trait Analysis Reveals Correlations Between Gene Expression and Quantitative Traits in Disjoint Samples. Genetics. 2019 Jul;212(3):919-929. doi: 10.1534/genetics.118.301865. Epub 2019 May 21. PubMed PMID: 31113812; PubMed Central PMCID: PMC6614885.

Tian K, Henderson RE, Parker R, Brown A, Johnson JE, Bateman JR. Two modes of transvection at the eyes absent gene of Drosophila demonstrate plasticity in transcriptional regulatory interactions in cis and in trans. PLoS Genet. 2019 May 10;15(5):e1008152. doi: 10.1371/journal.pgen.1008152. PMID: 31075100. PMCID: PMC6530868.

Wilson C, Kavaler J, Ahmad ST*. Expression of a human variant of CHMP2B linked to neurodegeneration in Drosophila external sensory organs leads to cell fate transformations associated with increased Notch activity. Dev Neurobiol. 2019 Oct 6. doi: 10.1002/dneu.22722. PMID: 31587468.

Bateman JR* , Kassis JA. Homolog Pairing at the Push of a Button. Dev Cell. 2019 Nov 4;51(3):295-296. doi: 10.1016/j.devcel.2019.10.014. PMID: 31689384.

Lan J, Rollins JA, Zang X, Wu D, Zou L, Wang Z, Ye C, Wu Z, Kapahi P, Rogers AN, Chen D. Translational Regulation of Non-autonomous Mitochondrial Stress Response Promotes Longevity. Cell Rep. 2019 Jul 23;28(4):1050-1062.e6. doi: 10.1016/j.celrep.2019.06.078. PMID: 31340143. PMCID: PMC6684276.

Martino PA , Carlon DB, Kingston SE. Blue mussel (genus Mytilus ) transcriptome response to simulated climate change in the Gulf of Maine suggests ability to cope under moderate multivariate stress. J. of Shellfish Research 2019, 38(3):587-602.

Schenk H, Masseli A, Schroder P, Bolaños-Palmieri P, Beese M, Hegermann J, Bräsen JH, Haller H. Sulfatases, in Particular Sulf1, Are Important for the Integrity of the Glomerular Filtration Barrier in Zebrafish. Biomed Res Int. 2019 Jul 22;2019:4508048. doi: 10.1155/2019/4508048. eCollection 2019. PMID: 31428635. PMCID: PMC6679890.

Schenk H, Müller-Deile J, Schroder P, Bolaños-Palmieri P, Beverly-Staggs L, White R, Bräsen JH, Haller H, Schiffer M. Characterizing renal involvement in Hermansky-Pudlak Syndrome in a zebrafish model. Sci Rep. 2019 Nov 27;9(1):17718. doi: 10.1038/s41598-019-54058-5. PMID: 31776394. PMCID: PMC6881439.

Tossidou I, Teng B, Worthmann K, Müller-Deile J, Jobst-Schwan T, Kardinal C, Schroder P, Bolanos-Palmieri P, Haller H, Willerding J, Drost DM, de Jonge L, Reubold T, Eschenburg S, Johnson RI, Schiffer M. Tyrosine Phosphorylation of CD2AP Affects Stability of the Slit Diaphragm Complex. J Am Soc Nephrol. 2019 Jul;30(7):1220-1237. doi: 10.1681/ASN.2018080860. Epub 2019 Jun 24. PMID: 31235616. PMCID: PMC6622410.

Epstein TD , Wu B, Moulton KD., Yan M and Dube DH*. Sugar-modified analogs of auranofin are potent inhibitors of the gastric pathogen Helicobacter pylori.  ACS Infect Dis. 2019.  5(10):1682-1687, PMID: 31487153.

Rand LM, Woodward C, May R, Ackerman RA, Tweedie B, Zicarelli TB , Dearborn* DC. Divergence between genes but limited allelic polymorphism in two MHC class II A genes in Leach’s storm-petrels Oceanodroma leucorhoa.  Immunogenetics. 2019 Sep;7 71:561-573. PMID: 31506710.

Dickinson PS*, Hull JJ,Miller A ,Oleisky ER , Christie AE. 2019. To what extent may peptide receptor gene diversity/complement contribute to functional flexibility in a simple pattern-generating neural network? Comp Biochem Physiol Part D Genomics Proteomics. 2019 Jun; 30:262-282. PMID: 30974344.

2018

Weatherly LM, Nelson AJ, Shim J, Riitano AM, Gerson ED, Hart AJ, de Juan-Sanz J, Ryan TA, Sher R, Hess ST, Gosse JA. Antimicrobial agent triclosan disrupts mitochondrial structure, revealed by super-resolution microscopy, and inhibits mast cell signaling via calcium modulation. Toxicology and applied pharmacology. 2018 June 15;349:39-54. PubMed PMID: 29630968; PubMed Central PMCID: PMC6705416

Gjelsvik KJ, Besen-McNally R, Losick VP. Solving the Polyploid Mystery in Health and Disease. Trends Genet. 2019 Jan;35(1):6-14. doi: 10.1016/j.tig.2018.10.005. Epub 2018 Nov 21. PMID: 30470486. PMCID: PMC6457904.

Ariyachet C, Beißel C, Li X, Lorrey S*, Mackenzie O, Martin PM, O’Brien K, Pholcharee T*, Sim S*, Krebber H, McBride AE*. Post-translational modification directs nuclear and hyphal tip localization of Candida albicans mRNA-binding protein Slr1. Mol Microbiol. 2017 May;104(3):499-519. PMID: 28187496. PMCID: PMC5405739.

Andralojc KM, Campbell AC, Kelly AL, Terrey M, Tanner PC, Gans IM, Senter-Zapata MJ, Khokhar ES, Updike DL. ELLI-1, a novel germline protein, modulates RNAi activity and P-granule accumulation in Caenorhabditis elegans. PLoS Genet. 2017 Feb 9;13(2):e1006611. PMID: 28182654. PMCID: PMC5325599.

Breton TS*, Nettleton JC, O’Connell B, Bertocci M.  Fine-scale population genetic structure of sugar kelp, Saccharina latissima (Laminariales, Phaeophyceae), in eastern Maine, USA.  Phycologia 2017 Nov; 57 32-40. NIHMSID: 919539.

Carmody M, Notarianni, TP, Sambel LA, Walsh, SJ, Burke JM, Armstrong JL, Lawson TG. E6AP/UBE3A catalyzes encephalomyocarditis virus 3C protease polyubiquitylation and promotes its concentration reduction in virus-infected cells. Biochem Biophys Res Commun. 2017 Dec 9;494(1-2):63-69. PMID: 29054411. PMCID: PMC5675005.

Christie AE, Miller A, Fernandez R, Dickinson ES, Jordan A, Kohn J, Youn MC, Dickinson PS*. Non-amidated and amidated members of the C-type allatostatin (AST-C) family are differentially distributed in the stomatogastric nervous system of the American lobster, Homarus americanus. Invert Neurosci. 2018 Jan 13;18(1):2. PMID: 29332202.

Christie AE, Roncalli V, Cieslak MC, Pascual MG, Yu A,  Lameyer TJ*, Stanhope ME, Dickinson PS. Prediction of a neuropeptidome for the eyestalk ganglia of the lobster Homarus americanus using a tissue-specific de novo assembled transcriptome.  Gen Comp Endocrinol. 2017; 243:96-119. PMID: 27823957

Clifford AM, Weinrauch AM, Edwards SL, Wilkie MP, Goss GG. Flexible ammonia handling strategies using both cutaneous and branchial epithelia in the highly ammonia-tolerant Pacific hagfish. Am J Physiol Regul Integr Comp Physiol. 2017 Aug 1;313(2):R78-R90. PMID: 28515081. PMCID: PMC5582951.

Cuomo CA, Shea T, Yang B, Rao R, Forche A. Whole Genome Sequence of the Heterozygous Clinical Isolate Candida krusei 81-B-5. G3 (Bethesda). 2017 Sep 7;7(9):2883-2889. doi: 10.1534/g3.117.043547. PubMed PMID: 28696923; PubMed Central PMCID: PMC5592916

Dearborn DC, Page SM, Dainson M, Hauber ME, Hanley D. Eggshells as hosts of bacterial communities: an experimental test of the antimicrobial egg coloration hypothesis.  Ecol Evol. 2017 Oct 16;7(22):9711-9719. PMID:29188002. PMCID: PMC5696418.

Dickinson PS, Armstrong MK, Dickinson ES, Fernandez R, Miller A, Pong S, Powers B, Pupo Wiss A, Stanhope ME, Walsh PJ, Wiwatpanit T, Christie AE. Three members of a peptide family are differentially distributed and elicit differential state-dependent responses in a pattern generator-effector system. Journal of neurophysiology. 2018 January 31. PubMed PMID: 29384453.

Dedrick RM, Jacobs-Sera D, Bustamante CA, Garlena RA, Mavrich TN, Pope WH, Reyes JC, Russell DA, Adair T, Alvey R, Bonilla JA, Bricker JS, Brown BR, Byrnes D, Cresawn SG, Davis WB, Dickson LA, Edgington NP, Findley AM, Golebiewska U, Grose JH, Hayes CF, Hughes LE, Hutchison KW, Isern S, Johnson AA, Kenna MA, Klyczek KK, Mageeney CM, Michael SF, Molloy SD, Montgomery MT, Neitzel J, Page ST, Pizzorno MC, Poxleitner MK, Rinehart CA, Robinson CJ, Rubin MR, Teyim JN, Vazquez E, Ware VC, Washington J, Hatfull GF. Prophage-mediated defence against viral attack and viral counter-defence. Nature microbiology. 2017 January 9;2:16251. PubMed PMID: 28067906; PubMed Central PMCID: PMC5508108.

Duke CG, Kennedy AJ, Gavin CF, Day JJ, Sweatt JD. “Experience-dependent epigenomic reorganization in the hippocampus.” Learning and Memory. 2017. Jun 15;24(7):278-288. doi: 10.1101/lm.045112.117. PMID: 28620075 PMCID: PMC5473107.

Duong M, Yu X, Teng B, Schroder P, Haller H, Eschenburg S, Schiffer M. Protein kinase C ϵ stabilizes β-catenin and regulates its subcellular localization in podocytes. J Biol Chem. 2017 Jul 21;292(29):12100-12110. PMID: 28539358. PMCID: PMC5519362.

DuShane JK*, Wilczek MP*, Mayberry CL*, Maginnis MS*. MAPK ERK is a Critical Regulator of JCPyV Infection. Journal of Virology. PMID:29321332.DOI:10.1128/JVI.01529-17 INBRE cited.

Godwin JW*, Debuque R, Salimova E, Rosenthal NA. Heart regeneration in the salamander relies on macrophage-mediated control of fibroblast activation and the extracellular landscape. NPJ Regen Med. 2017;2. pii: 22. PMID: 29201433. PMCID: PMC5677961.

Gould, TJ*, K. Toth, N. Mucke, J. Langowski, A. Hakusui, A. L. Olins, and D. E. Olins. (2017) “Defining the Epichromatin Epitope,” Nucleus, [Epub ahead of print]. PMID: 28960120.

Hahn ME, Karchner SI, Merson RR. Diversity as Opportunity: Insights from 600 Million Years of AHR Evolution. Current opinion in toxicology. 2017 February;2:58-71. PubMed PMID: 28286876; PubMed Central PMCID: PMC5343764.

Hanauer DI, Graham MJ, Betancur L, Bobrownicki A, Cresawn SG, Garlena RA, Jacobs-Sera D, Kaufmann N, Pope WH, Russell DA, Jacobs WR Jr, Sivanathan V, Asai DJ, Hatfull GF. An inclusive Research Education Community (iREC): Impact of the SEA-PHAGES program on research outcomes and student learning. Proc Natl Acad Sci U S A. 2017 Dec 19;114(51):13531-13536. PMID: 29208718. PMCID: PMC5754813.

Herren, C et al.  Genome sequences of four subcluster L2 Mycobacterium phages, Finemlucis, Miley16, WIlder, and Zakai.  Genome Announcements 2017 Nov 16;5(46)1-2.  PMID 29146853. PMCID:  PMC5690330.

Ianov L, De Both M, Chawla M, Rani A, Kennedy AJ, Piraz I, Day JJ, Siniard A, Kumar A, Sweatt JD, Barnes CA, Huentelman MJ, Foster TC. “Hippocampal transcriptomic profiles: Subfield vulnerability to age and cognitive impairment.” Frontiers in Aging Neuroscience. 2017. PMID:29276487. PMCID: PMC5727020.

King BL*, Yin VP. Prioritizing studies on regeneration in nontraditional model organisms. Regen Med. 2017 Jan;12(1):1-3. doi: 10.2217/rme-2016-0159. Epub 2016 Dec 7. PubMed PMID: 27925505.

Lisse TS, Rieger S*. IKKα regulates human keratinocyte migration through surveillance of the redox environment. J Cell Sci. 2017 Mar 1;130(5):975-988. PMID: 28122935. PMCID: PMC5358334.

Mayberry CL, Nelson CDS, Maginnis MS. JC Polyomavirus Attachment and Entry: Potential Sites for PML Therapeutics. Current clinical microbiology reports. 2017 September;4(3):132-141. PubMed PMID: 28989857; PubMed Central PMCID: PMC5629017.

McBride AE*. Messenger RNA transport in the opportunistic fungal pathogen Candida albicans. Curr Genet. 2017 Dec;63(6):989-995. PMID:28512683. PMCID: PMC5669823.

Müller-Deile J, Dannenberg J, Schroder P, Lin MH, Miner JH, Chen R, Bräsen JH, Thum T, Nyström J, Staggs LB, Haller H, Fiedler J, Lorenzen JM, Schiffer M. Podocytes regulate the glomerular basement membrane protein nephronectin by means of miR-378a-3p in glomerular diseases. Kidney Int. 2017 Oct;92(4):836-849. PMID: 28476557. PMCID: PMC5658661.

Nickerson CA*, Brown AL*, Yu W*, Chun Y*, Glenn MJ*. Prenatal choline supplementation attenuates MK-801-induced deficits in memory, motor function, and hippocampal plasticity in adult male rats. Neuroscience. INBRE cited. PMCID: PMC5605469.

Peck RF*, Plesa AM*, Graham SM*, Angelini DR, Shaw EM*. Opsin-mediated Inhibition of bacterioruberin synthesis in halophilic archaea. Journal of Bacteriology 2017 Nov; 199: e00303-17. PMID: 28784816. PMCID: PMC5626960.

Pennacchietti, F, T. J. Gould*, and S. T. Hess. (2017) “The Role of Probe Photophysics in Localization-Based Superresolution Microscopy.” Biophysical Journal, 113:2037-2054.PMID: 29117527. PMCID: PMC5686043.

Reid NM, Jackson CE, Gilbert D, Minx P, Montague MJ, Hampton TH, Helfrich LW, *King BL, Nacci DE, Aluru N, Karchner SI, Colbourne JK, Hahn ME, Shaw JR, Oleksiak MF, Crawford DL, Warren WC, Whitehead A. The landscape of extreme genomic variation in the highly adaptable Atlantic killifish. Genome Biol Evol. 2017 Feb 13. doi: 10.1093/gbe/evx023. PubMed PMID: 28201664; PubMed Central PMCID: PMC5381573.

Rochester JD, Tanner PC, Sharp CS, Andralojc KM, Updike DL. PQN-75 is expressed in the pharyngeal gland cells of Caenorhabditiselegans and is dispensable for germline development. Biol Open. 2017 Sep 15;6(9):1355-1363. PMID: 28916707. PMCID: PMC5612245.

Sant KE, Hansen JM, Williams LM, Tran NL, Goldstone JV, Stegeman JJ, Hahn ME, Timme-Laragy A. The role of Nrf1 and Nrf2 in the regulation of glutathione and redox dynamics in the developing embryos. Redox Biology 2017 13: 207-218. PMID: 28582729. PMCID: PMC5458767.

Simmons WR* and Angelini DR*. Chronic Environmental Exposure to a Neonicotinoid Increases Expression of Antimicrobial Peptide Genes in Bombus impatiens. Scientific Reports 7:44773. INBRE cited.  PMCID# PMC5359568.

Smith AM, Maguire-Nguyen KK, Rando TA, Zasloff MA, Strange KB, Yin VP. The protein tyrosine phosphatase 1B inhibitor MSI-1436 stimulates regeneration of heart and multiple other tissues. NPJ Regen Med. 2017 Mar 3;2:4. PMID: 29302341. PMCID: PMC5677970.

Stefanelli, Gilda, Amber B. Azam, Brandon J. Walters, Mark A. Brimble, Caroline P. Gettens, Pascale Bouchard-Cannon, Hai-Ying M. Cheng, Andrew M. Davidoff, Klotilda Narkaj, Jeremy J. Day, Andrew J. Kennedy*, and Iva B. Zovkic*. Learning and age-related changes in genome-wide H2A.Z binding in the mouse hippocampus. Cell Reports. 2018, PMID: 29386101

Sullivan* C., C Lage, J Yoder, J Postlethwait, C Kim.  2017.  Evolutionary divergence of the vertebrate TNFAIP8 gene family: Applying the spotted gar orthology bridge to understand ohnolog loss in teleosts. PLOS One 12(6):e0179517. PMID: 28658311. PMCID:  PMC5489176.

Waldron AL, Schroder PA, Bourgon KL, Bolduc JK, Miller JL, Pellegrini AD, Dubois AL, Blaszkiewicz M, Townsend KL, Rieger S. Oxidative stress-dependent MMP-13 activity underlies glucose neurotoxicity. Journal of diabetes and its complications. 2017 December 6. PubMed PMID: 29306589.

Wirth P*, Yu W*, Kimball AL, Liao J*, Berkner P, Glenn MJ*. New method to induce mild traumatic brain injury in rodents produces differential outcomes in female and male Sprague Dawley rats. Journal of Neuroscience Methods. 2017 October 1;290:133-144. PubMed PMID: 28780369.

Yue S,  Wadia V*, Sekula N, Dickinson PS, Thompson RR. Acute effects of sex steroids on visual processing in male goldfish. J Comp Physiol A Neuroethol Sens Neural Behav Physiol. 2017 Oct 28. doi: 10.1007/s00359-017-1220-6. PMID: 29080952.

Zhu S, Coffman JA. Simple and fast quantification of DNA damage by real-time PCR, and its application to nuclear and mitochondrial DNA from multiple tissues of aging zebrafish. BMC research notes. 2017 July 11;10(1):269. PubMed PMID: 28693618; PubMed Central PMCID: PMC5504608.

Horch, HW* (edited by). Cricket as a Model Organism:  Development, Regeneration, and Behavior.  Edited by Hadley Wilson Horch, Taro Mito, Aleksandar Popadic, Hideyo Ohuchi, Sumihare Noji.  Springer (New York, Heidelberg).2017.

Horch, HW*,  Liu, J., Mito, T., Popaidc, A., and Watanabe, T.  Protocols in the Cricket. 2017. In: Cricket as a Model Organism: Development, Regeneration, and Behavior. Pp 327-370. Edited by Hadley Wilson Horch, Taro Mito, Aleksandar Popadic, Hideyo Ohuchi, Sumihare Noji. Springer (New York, Heidelberg).

Horch, HW*,  Pfister A., Ellers, O., Johnson, A.S. Plasticity in the cricket central nervous system. 2017.  In: Cricket as a Model Organism:  Development, Regeneration, and Behavior. pp 105-128. Edited by Hadley Wilson Horch, Taro Mito, Aleksandar Popadic, Hideyo Ohuchi, Sumihare Noji.  Springer (New York, Heidelberg). 2017.

Yin V.P. In Situ Detection of MicroRNA Expression with RNAscope Probes. In: Gaspar I. (eds) RNA Detection. Methods in Molecular Biology, vol 1649. (2018) Humana Press, New York, NY.

Godwin, J*.  Controlling both the constructive and destructive power of inflammation to promote repair and regeneration. Book chapter in Regenerative Engineering and Developmental Biology: Principles and Applications. Edited By David M. Gardiner, 1st Edition. Published 12 September 2017, Pub. location Boca Raton. Imprint CRC Press, Pages 646 pages. eBook ISBN 9781498723329.

Godwin JW, Pinto AR, Rosenthal NA.  Chasing the recipe for a pro-regenerative immune system.  Semin Cell Dev Biol. 2017 Jan;61:71- 79. doi: 10.1016/j.semcdb.2016.08.008. Epub 2016 Aug 10.  Review.  PMID: 27521522; PMCID: PMC5338634.

Duong M, Yu X, Teng B, Schroder P, Haller H, Eschenburg S, Schiffer M. Protein kinase C ϵ stabilizes β-catenin and regulates its subcellular localization in podocytes.  J Biol Chem. 2017 Jul 21;292(29):12100-12110. doi: 10.1074/jbc.M117.775700. Epub 2017 May 24.  PMID: 28539358.

Müller-Deile J, Dannenberg J, Schroder P, Lin MH, Miner JH, Chen R, Bräsen JH, Thum T, Nyström J, Staggs LB, Haller H, Fiedler J, Lorenzen JM, Schiffer M. Podocytes regulate the glomerular basement membrane protein nephronectin by means of miR-378a-3p in glomerular diseases.    Kidney Int. 2017 May 3. PMID: 28476557.

Rollins JA, Howard AC, Dobbins SK, Washburn EH, Rogers AN.  Assessing health span in Caenorhabditis elegans: lessons from short-lived mutants. J Gerontol A Biol Sci Med Sci. 2017 Apr 1;72(4):473-480. doi: 10.1093/gerona/glw248.  PMID: 28158466.

Schenk H, Müller-Deile J, Kinast M, Schiffer M.  Disease modeling in genetic kidney diseases: zebrafish.  Cell Tissue Res. 2017 Jul;369(1):127-141. doi: 10.1007/s00441-017-2593-0. Epub 2017 Mar 22.  PMID: 28331970.

Waldron AL, Schroder PA, Bourgon KL, Bolduc JK, Miller JL, Pellegrini AD, Dubois AL, Blaszkiewicz M, Townsend KL, Rieger S*. Oxidative stress-dependent MMP-13 activity underlies glucose neurotoxicity. J Diabetes Complications. PMID: 29306589.

2017

Andralojc KM, Campbell AC, Kelly AL, Terrey M*, Tanner PC, Gans IM, Senter-Zapata MJ, Khokhar ES, Updike DL. ELLI-1, a novel germline protein, modulates RNAi activity and P-granule accumulation in Caenorhabditis elegans. PLoS Genet. 2017 Feb 9;13(2): e1006611. PMID: 28182654. PMCID: PMC5325599.

Ariyachet C*, Beißel C, Li X*, Lorrey S*, Mackenzie O*, Martin PM*, O’Brien K*, Pholcharee T*, Sim S*, Krebber H, McBride AE†. Post-translational modification directs nuclear and hyphal tip localization of Candida albicans mRNA-binding protein Slr1. Mol Microbiol. 2017 May;104(3):499-519. PMID: 28187496. m: PMC5405739.

Breton TS†, Nettleton JC, O’Connell B*, Bertocci M*. Fine-scale population genetic structure of sugar kelp, Saccharina latissima (Laminariales, Phaeophyceae), in eastern Maine, USA. Phycologia 2017 Nov; 57 32-40. PMID: 29170569 PMCID: PMC5695712.

Carmody M, Notarianni TP*, Sambel LA*, Walsh SJ*, Burke JM, Armstrong JL*, Lawson TG. E6AP/UBE3A catalyzes encephalomyocarditis virus 3C protease polyubiquitylation and promotes its concentration reduction in virus-infected cells. Biochem Biophys Res Commun. 2017 Dec 9;494(1-2):63-69. PMID: 29054411. PMCID: PMC5675005.

Christie AE, Roncalli V, Cieslak MC*, Pascual MG*, Yu A*, Lameyer TJ*, Stanhope ME*, Dickinson PS. Prediction of a neuropeptidome for the eyestalk ganglia of the lobster Homarus americanus using a tissue-specific de novo assembled transcriptome.  Gen Comp Endocrinol. 2017; 243:96-119. PMID: 27823957. PMCID: PMC5796769.

Clifford AM, Weinrauch AM, Edwards SL, Wilkie MP, Goss GG. Flexible ammonia handling strategies using both cutaneous and branchial epithelia in the highly ammonia-tolerant Pacific hagfish. Am J Physiol Regul Integr Comp Physiol. 2017 Aug 1;313(2): R78-R90. PMID: 28515081. PMCID: PMC5582951.

Cuomo CA, Shea T, Yang B, Rao R, Forche A. Whole Genome Sequence of the HeterozygousClinical Isolate Candida krusei 81-B-5. G3 (Bethesda). 2017 Sep 7;7(9):2883-2889. PMID: 28696923. PMCID: PMC5592916.

Davis AP, Grondin CJ, Johnson RJ, Sciaky D, King BL, McMorran R, Wiegers J, Wiegers TC, Mattingly CJ. The Comparative Toxicogenomics Database: update 2017. Nucleic Acids Res. 2017 Jan 4;45(D1):D972-D978. doi: 10.1093/nar/gkw838. PMID: 27651457. PMCID: PMC5210612.

Dearborn DC, Page SM*, Dainson M*, Hauber ME, Hanley D. Eggshells as hosts of bacterial communities: an experimental test of the antimicrobial egg coloration hypothesis.  Ecol Evol. 2017 Oct 16;7(22):9711-9719. PMID:29188002. PMCID: PMC5696418.

Dedrick RM, Jacobs-Sera D, Bustamante CA, Garlena RA, Mavrich TN, Pope WH, Reyes JC, Russell DA, Adair T, Alvey R, Bonilla JA, Bricker JS, Brown BR, Byrnes D, Cresawn SG, Davis WB, Dickson LA, Edgington NP, Findley AM, Golebiewska U, Grose JH, Hayes CF, Hughes LE, Hutchison KW, Isern S, Johnson AA, Kenna MA, Klyczek KK, Mageeney CM, Michael SF, Molloy SD, Montgomery MT, Neitzel J, Page ST, Pizzorno MC, Poxleitner MK, Rinehart CA, Robinson CJ, Rubin MR, Teyim JN, Vazquez E, Ware VC, Washington J, Hatfull GF. Prophage-mediated defence against viral attack and viral counter-defence. Nat Microbiol. 2017 Jan 9;2:16251. Article number: 16251. doi: 10.1038/nmicrobiol.2016.251. PMID: 28067906. PMCID: PMC5508108.

Duke CG, Kennedy AJ†, Gavin CF, Day JJ, Sweatt JD. Experience-dependent epigenomic reorganization in the hippocampus. Learning and Memory. 2017. Jun 15;24(7):278-288. PMID: 28620075 PMCID: PMC5473107.

Duong M, Yu X, Teng B, Schroder P, Haller H, Eschenburg S, Schiffer M. Protein kinase C ϵ stabilizes β-catenin and regulates its subcellular localization in podocytes. J Biol Chem. 2017 Jul 21;292(29):12100-12110. PMID: 28539358. PMCID: PMC5519362.

DuShane JK*, Wilczek MP*, Mayberry CL*, Maginnis MS†. MAPK ERK is a Critical Regulator of JCPyV Infection. Journal of Virology. PMID: 29321332.

Godwin JW†, Debuque R, Salimova E, Rosenthal NA. Heart regeneration in the salamander relies on macrophage-mediated control of fibroblast activation and the extracellular landscape. NPJ Regen Med. 2017;2. pii: 22. PMID: 29201433. PMCID: PMC5677961.

Gould, TJ†, K. Toth, N. Mucke, J. Langowski, A. Hakusui*, A. L. Olins, and D. E. Olins. (2017) Defining the Epichromatin Epitope, Nucleus, [Epub ahead of print]. PMID: 28960120. PMCID in progress.

Hahn ME, Karchner SI, Merson RR. Diversity as Opportunity: Insights from 600 Million Years of AHR Evolution. Current opinion in toxicology. 2017 February; 2:58-71. PMID: 28286876; PMCID: PMC5343764.

Hanauer DI, Graham MJ, Betancur L, Bobrownicki A, Cresawn SG, Garlena RA, Jacobs-Sera D, Kaufmann N, Pope WH, Russell DA, Jacobs WR Jr, Sivanathan V, Asai DJ, Hatfull GF. An inclusive Research Education Community (iREC): Impact of the SEA-PHAGES program on research outcomes and student learning. Proc Natl Acad Sci U S A. 2017 Dec 19;114(51):13531-13536. PMID: 29208718. PMCID: PMC5754813.

Herren, C et al.  Genome sequences of four subcluster L2 Mycobacterium phages, Finemlucis, Miley16, WIlder, and Zakai.  Genome Announcements 2017 Nov 16;5(46)1-2.  PMID: 29146853. PMCID: PMC5690330.

Ianov L, De Both M, Chawla M, Rani A, Kennedy AJ†, Piraz I, Day JJ, Siniard A, Kumar A, Sweatt JD, Barnes CA, Huentelman MJ, Foster TC. Hippocampal transcriptomic profiles: Subfield vulnerability to age and cognitive impairment. Frontiers in Aging Neuroscience. 2017. PMID: 29276487. PMCID: PMC5727020.

King BL, Yin VP. Prioritizing studies on regeneration in nontraditional model organisms. Regen Med. 2017 Jan;12(1):1-3. doi: 10.2217/rme-2016-0159. Epub 2016 Dec 7. PMID: 27925505.

Lisse TS, Rieger S. IKKα regulates human keratinocyte migration through surveillance of the redox environment. J Cell Sci. 2017 Mar 1;130(5):975-988. PMID: 28122935. PMCID: PMC5358334.

Mangiamele, LL, Gomez, JR*, Curtis, NL, Thompson, RR. GPER/GPR30, a membrane estrogen receptor, is expressed in brain and retina of a social fish (Carassius auratus) and co-localizes with isotocin. Journal of Comparative Neurology. 2017 Feb 1;525(2):252-270. PMID: 27283982. PMCID: PMC5138143.

Mayberry CL, Nelson CDS, Maginnis MS†. JC Polyomavirus Attachment and Entry: Potential Sites for PML Therapeutics. Current clinical microbiology reports. 2017 September;4(3):132-141. PMID: 28989857. PMCID: PMC5629017.

McBride AE†. Messenger RNA transport in the opportunistic fungal pathogen Candida albicans. Curr Genet. 2017 Dec;63(6):989-995. PMID: 28512683. PMCID: PMC5669823.

Müller-Deile J, Dannenberg J, Schroder P, Lin MH, Miner JH, Chen R, Bräsen JH, Thum T, Nyström J, Staggs LB, Haller H, Fiedler J, Lorenzen JM, Schiffer M. Podocytes regulate the glomerular basement membrane protein nephronectin by means of miR-378a-3p in glomerular diseases. Kidney Int. 2017 Oct;92(4):836-849. PMID: 28476557. PMCID: PMC5658661.

Nickerson CA*, Brown AL*, Yu W*, Chun Y*, Glenn MJ†. Prenatal choline supplementation attenuates MK-801-induced deficits in memory, motor function, and hippocampal plasticity in adult male rats. Neuroscience. PMCID: PMC5605469.

Peck RF†, Plesa AM*, Graham SM*, Angelini DR, Shaw EM*. Opsin-mediated Inhibition of bacterioruberin synthesis in halophilic archaea. Journal of Bacteriology 2017 Nov; 199: e00303-17. PMID: 28784816. PMCID: PMC5626960.

Pennacchietti, F, T.J. Gould†, and S. T. Hess. (2017) The Role of Probe Photophysics in Localization-Based Superresolution Microscopy. Biophysical Journal, 113:2037-2054. PMID: 29117527. PMCID: PMC5686043. PMCID: PMC5489176.

Reid NM, Jackson CE, Gilbert D, Minx P, Montague MJ, Hampton TH, Helfrich LW, King BL, Nacci DE, Aluru N, Karchner SI, Colbourne JK, Hahn ME, Shaw JR, Oleksiak MF, Crawford DL, Warren WC, Whitehead A. The landscape of extreme genomic variation in the highly adaptable Atlantic killifish. Genome Biol Evol. 2017 Feb 13. PMID: 28201664. PMCID: PMC5381573.

Rochester JD, Tanner PC, Sharp CS, Andralojc KM, Updike DL. PQN-75 is expressed in the pharyngeal gland cells of Caenorhabditiselegans and is dispensable for germline development. Biol Open. 2017 Sep 15;6(9):1355-1363. PMID: 28916707. PMCID: PMC5612245.

Rollins JA, Howard AC, Dobbins SK, Washburn EH*, Rogers AN. Assessing health span in Caenorhabditis elegans: lessons from short-lived mutants. J Gerontol A Biol Sci Med Sci. 2017 Apr 1;72(4):473-480. doi: 10.1093/gerona/glw248. PMID: 28158466.

Sant KE, Hansen JM, Williams LM†, Tran NL, Goldstone JV, Stegeman JJ, Hahn ME, Timme-Laragy A. The role of Nrf1 and Nrf2 in the regulation of glutathione and redox dynamics in the developing embryos. Redox Biology 2017 13: 207218. PMID: 28582729. PMCID: PMC5458767.

Schenk H, Müller-Deile J, Kinast M, Schiffer M. Disease modeling in genetic kidney diseases: zebrafish. Cell Tissue Res. 2017 Jul;369(1):127-141. doi: 10.1007/s00441-017-2593-0. Epub 2017 Mar 22. PMID: 28331970.

Simmons WR* and Angelini DR. Chronic Environmental Exposure to a Neonicotinoid Increases Expression of Antimicrobial Peptide Genes in Bombus impatiens. Scientific Reports 7:44773. PMCID: PMC5359568.

Smith AM, Maguire-Nguyen KK, Rando TA, Zasloff MA, Strange KB, Yin VP. The protein tyrosine phosphatase 1B inhibitor MSI-1436 stimulates regeneration of heart and multiple other tissues. NPJ Regen Med. 2017 Mar 3;2:4. PMID: 29302341. PMCID: PMC5677970.

Sullivan C†, C Lage, J Yoder, J Postlethwait, C Kim. 2017. Evolutionary divergence of the vertebrate TNFAIP8 gene family: Applying the spotted gar orthology bridge to understand ohnolog loss in teleosts. PLOS One 12(6):e0179517. PMID: 28658311. PMCID: PMC5489176.

Waldron AL, Schroder PA, Bourgon KL*, Bolduc JK, Miller JL, Pellegrini AD, Dubois AL, Blaszkiewicz M, Townsend KL, Rieger S*. Oxidative stress-dependent MMP-13 activity underlies glucose neurotoxicity. J Diabetes Complications. PMID: 29306589. PMCID: PMC5820202.

Wirth P*, Yu W*, Kimball AL, Liao J*, Berkner P, Glenn MJ†. New method to induce mild traumatic brain injury in rodents produces differential outcomes in female and male Sprague Dawley rats. Journal of Neuroscience Methods. 2017 October 1;290:133-144. PMID: 28780369. PMCID: PMC5790318.

Yue S*, Wadia V*, Sekula N*, Dickinson PS, Thompson RR. Acute effects of sex steroids on visual processing in male goldfish. J Comp Physiol A Neuroethol Sens Neural Behav Physiol. 2017 Oct 28. PMID: 29080952. PMCID: PMC5818146.

Zhu S, Coffman JA. Simple and fast quantification of DNA damage by real-time PCR, and its application to nuclear and mitochondrial DNA from multiple tissues of aging zebrafish. BMC research notes. 2017 July 11;10(1):269. PMID: 28693618; PMCID: PMC5504608.

2016

Bavis RW, Li KY, DeAngelis KJ, March RJ*, Wallace JA, Logan S*, Putnam RW. Ventilatory and chemoreceptor responses to hypercapnia in neonatal rats chronically exposed to moderate hyperoxia. Respir Physiol Neurobiol. 2016 Dec 26;237:22-34. PMID: 28034711. PMCID: PMC5272815.

Blick AJ, Mayer-Hirshfeld I*, Malibiran BR, Cooper MA*, Martino PA, Johnson JE, Bateman JR. The capacity to act in trans varies among Drosophila enhancers. Genetics. 2016 May; 203(1):203-18. PMID: 26984057; PMCID: PMC4858774.

Bodnar A, Coffman JA. Maintenance of somatic tissue regeneration with age in short- and long-lived species of sea urchins. Aging Cell 2016 Aug;15(4): 778-87. PMID: 27095483. PMCID: 4933669.

Clark EL*, Emmadi M, Krupp KL*, Podilapu AR, Helble JD*, Kulkarni SS, Dube DH†, Development of rare bacterial monosaccharide analogs for metabolic glycan labeling in pathogenic bacteria, ACS Chemical Biology 2016 Dec 16;11(12):3365-3373. PMID: 27766829. PMCID: PMCID: PMC5161589.

Davis AP, Wiegers TC, King BL, Wiegers J, Grondin CJ, Sciaky D, Johnson RJ, Mattingly CJ. Generating Gene Ontology-Disease Inferences to Explore Mechanisms of Human Disease at the Comparative Toxicogenomics Database. PLoS One. 2016 May 12;11(5):e0155530. PMID: 27171405; PMCID: PMC4865041.

Dearborn DC, Gager AB, McArthur AG, Gilmour ME, Mandzhukova E*, Mauck RA.  Gene duplication and divergence produce diverse MHC genotypes without disassortative mating.  Molecular Ecology 2016; 25: 4355-4367. PMID: 27376487. PMCID: PMC5021581.

Dickinson, ES*, AS Johnson, O Ellers, PS Dickinson. Forces generated during stretch in the heart of the lobster Homarus americanus are anisotropic and are altered by neuromodulators. J Exp Biol. 2016; 219:1187-202. PMID: 26896540. PMCID: PMC4852687.

Dimitriadi M, Derdowski A, Kalloo G, Maginnis MS†, Bliska B, O’ Hern P, Nguyen KCQ, Cook SJ, Poulogiannis G, Atwood WJ, Hall DH, Hart AC. Decreased Function of Survival Motor Neuron Protein Impairs Endocytic Pathways. PNAS 2016 July;113(30):E4377-86. PMID: 27402754. PMCID: PMC4968725.

Grondin CJ, Davis AP, Wiegers TC, King BL, Wiegers JA, Reif DM, Hoppin JA, Mattingly CJ. Advancing Exposure Science through Chemical Data Curation and Integration in the Comparative Toxicogenomics Database. Environ Health Perspect. 2016 Oct;124(10):1592-1599. PMID: 27170236. PMCID: PMC5047769.

Hartig EI, Zhu S, King BL, Coffman JA. Cortisol-treated zebrafish embryos develop into pro-inflammatory adults with aberrant immune gene regulation. Biol Open. 2016 Aug 15;5(8):1134-41. doi: 10.1242/bio.020065. PMID: 27444789; PMCID: PMC5004618.

Hopke A*, Nicke N, Hidu EE*, Degani G, Popolo L, Wheeler RT†. Neutrophil Attack Triggers Extracellular Trap-Dependent Candida Cell Wall Remodeling and Altered Immune Recognition. PLoS Pathog. 2016 May 25;12(5):e1005644. doi: 10.1371/journal.ppat.1005644. PMID: 27223610. PMCID: PMC4880299.

Howard AC, Rollins J, Snow S, Castor S*, Rogers AN. Reducing translation through eIF4G/IFG-1 improves survial under ER stress that depends on heat shock factor HSF-1 in Caenorhabditis elegans. Aging Cell 2016 Dec; 15(6): 1027-1038. PMID: 27538368. PMCID: PMC5114698.

King BL, Shi LF, Kao P, Clusin WT. Calcium activated K⁺ channels in the electroreceptor of the skate confirmed by cloning. Details of subunits and splicing. Gene. 2016 March 1;578(1):63-73. PMID: 26687710. PMCID: PMC4724458.

King BL, Yin VP. A conserved microRNAs regulatory circuit is differentially controlled during limb/appendage regeneration. PLoS One. 2016 Jun 29;11(6):e0157106. PMID: 27355827. PMCID: PMC4927183.

Kohorn BD, Hoon D, Minkoff BB, Sussman MR, Kohorn SL. Rapid oligo-galacturonide induced changes in protein phosphorylation in Arabidopsis. Mol Cell Proteomics. 2016 Apr;15(4):1351-9. PMID: 26811356. PMCID: PMC4824860.

Korstanje R, Deutsch K, Bolanos-Palmieri P, Hanke N, Schroder P, Staggs L, Bräsen JH, Roberts IS, Sheehan S, Savage H, Haller H, Schiffer M. Loss of kynurenine 3-mono-oxygenase causes proteinuria. J Am Soc Nephrol 2016 Nov; 27(11): 3271-3277. PMID: 27020856. PMCID: PMC5084883.

Lee EC, Kim H, Ditano J*, Manion D*, King BL, Strange K. Abnormal osmotic avoidance behavior in C. elegans is associated with increased hypertonic stress resistance and improved proteostasis. PLoS One. 2016 Apr 25;11(4):e0154156. PMID: 27111894. PMCID: PMC4844114.

Liao J*, Seggio JA, Ahmad ST†. Mutations in the circadian gene period alter behavioral and biochemical responses to ethanol in Drosophila. Behavioural Brain Research 2016 April 1; 302:213-9. PMID: 26802726 PMCID: PMC4769108.

Lisse TS, King BL, Rieger S. Comparative transcriptomic profiling of hydrogen peroxide signaling networks in zebrafish and human keratinocytes: Implications toward conservation, migration and wound healing. Sci Rep. 2016 Feb 5;6:20328. PMID: 26846883. PMCID: PMC4742856.

Lisse TS, Middleton LJ, Pellegrini AD, Martin PB, Spaulding EL, Lopes O*, Brochu EA, Carter EV, Waldron A, Rieger S. Paclitaxel-inducted epithelial damange and ectopic MMP-13 expression promotes neurotoxicity in zebrafish. Proc Natl Acad Sci USA. 2016 Apr 12;113(15):E2189-98. PMID: 27035978. PMCID: PMC4839466.

Logan S*, Tobin KE*, Fallon SC*, Deng KS, McDonough AB, Bavis RW. Chronic intermittent hyperoxia alters the development of the hypoxic ventilatory response in neonatal rats. Respiratory physiology & neurobiology. 2016 January;220:69-80. PMID: 26444750. PMCID: PMC4688092.

Mills ML*, Bragg J, Bruce A*, Dehn A*, Drouin J, Hefner M*, Katon D, McHugh D*, Zeba F, Bowman CA, Cresawn SG, Jacobs-Sera D, Russell DA, Pope WH, Hatfull GF, Dunbar DA, Zegers GP†, Page ST, Genome Sequences of Newly Isolated Mycobacteriophages Forming Cluster S Genome Announcements September/October 2016 Volume 4 Issue 5, PMC5043550.

Palopoli MF, Tra V*, Matoin K*, Mac PD*. 2016. Evolution of host range in the follicle mite Demodex kutzeri. Parasitology 2016 Nov 29:1-7. [Epub ahead of print]. PMID: 27894366.

Rizzo F, Coffman JA, Arnone MI. An Elk transcription factor is required for Runx-dependent survival signaling in the sea urchin embryo. Developmental biology. 2016 August 1;416(1):173-86. PMID: 27235147. PMC4961547.

Shim J*, Kennedy RH, Weatherly LM, Hutchinson LM, Pelletier JH*, Hashmi HN*, Blais K, Velez A*, Gosse JA. Arsenic inhibits mast cell degranulation via suppression of early tyrosine phosphorylation events. Journal of applied toxicology: JAT. 2016 November;36(11):1446-59. PMID: 27018130. PMCID: PMC5040607.

Soto I, Grabowska WA*, Onos KD, Graham LC, Jackson HM, Simeone SN, Howell GR. Meox2 haploinsufficiency increases neuronal cell loss in a mouse model of Alzheimer’s disease. Neurobiology of Aging 2016. June: 42:50-60. PMCID: PMC4878023.

Soundararajan R, Stearns TM, Czachor A, Fukumoto J, Turn C, Westermann-Clark E, Breitzig M, Tan L, Lockey RF, King BL, Kolliputi N. Global gene profiling of aging lungs in Atp8b1 mutant mice. Aging (Albany NY). 2016 Sep 29;8(9):2232-2252. doi: 10.18632/aging.101056. PMID: 27689529. PMCID: PMC5076460.

Tarver JE, Dos `Reis M, Mirarab S, Moran RJ, Parker S, O’Reilly JE, King BL, O’Connell MJ, Asher RJ, Warnow T, Peterson KJ, Donoghue PC, Pisani D. The Interrelationships of Placental Mammals and the Limits of Phylogenetic Inference. Genome Biol Evol. 2016 Jan 5;8(2):330-44. doi: 10.1093/gbe/evv261. PMID: 26733575. PMCID: PMC4779606.

Teng B, Schroder P, Müller-Deile J, Schenk H, Staggs L, Tossidou I, Dikic I, Haller H, Schiffer M. CIN85 deficiency prevents nephrin endocytosis and proteinuria in diabetes. Diabetes 2016 Dec;65(12): 3667-3679. PMID: 27531950. PMCID: PMC5314701.

Williams LM†, Lago B*, McArthur AG*, Raphenya AR, Pray N*, Saleem N*, Salas S*, Paulson K*, Mangar R*, Liu Y, Vo AH, Shavit J. The transcription factor, Nuclear factor, erythroid 2 (Nfe2), is a regulator of the oxidative stress response during Danio rerio development. Aquatic Toxicology 2016 Nov; 180: 141-154. PMID: 27716579. PMCID: PMC5274700.

Wilson JJ*, Grendler J*, Dunlap-Smith A*, Beal BF, and Page ST, Analysis of Gene Expression in an Inbred Line of Soft-Shell Clams (Mya arenaria) Displaying Growth Heterosis: Regulation of Structural Genes and the NOD2 Pathway International Journal of Genomics Volume 2016, Article ID 6720947, PMC5086354.

Yamada T, Krzeminski M, Bozoky Z, Forman-Kay JD, Strange K. Role of CBS and Bateman domains in phosphorylation-dependent regulation of a CLC anion channel. Biophys J. 2016 Nov;111(9): 1876-1886. PMID: 27806269. PMCID: 5103030.

Yamada T, Strange K. Regulatory conformational coupling between CLC anion channel membrane and cytoplasmic domains. Biophys J. 2016 Nov;111(9): 1887-1896. PMID: 27806270. PMCID: PMC5103031.

Yamada T, Wondergem R, Morrison R, Yin VP, Strange K. Leucine-rich repeat containing protein LRRC8A is essential for swelling-activated Cl- currents and embryonic development in zebrafish. Physiol Rep. 2016 Oct;4(19): phy2. 12940. PMID: 27688432. PMCID: PMC5064130.

2015

Arenas-Mena, C. and Coffman, J.A. (2015). Developmental control of transcriptional and proliferative potency during the evolution of complex multicellularity.  Dev. Dyn., 244 (10): 1193-1201.  PMCID: PMC4705838.

Bavis RW, Blegen HJ, Logan S, Fallon SC, McDonough AB. Role of TrkB during the postnatal development of the rat carotid body. Respiratory Physiology and Neurobiology 2015 Dec;219:18-24. PMID: 26222433. PMCID: PMC4639446.

Bahman Rostama, Jacqueline E. Turner, Guy T. Seavey, Christine R. Norton, Thomas Gridley, Calvin P.H. Vary, Lucy Liaw.  DLL4/Notch1 and BMP9 Interdependent Signaling Induces Human Endothelial Cell Quiescence via P27KIP1 and Thrombospondin-1.  Arteriosclerosis, Thrombosis, and Vascular Biology, 35(12):2626-37.  2015 Dec. PMCID: PMC4662626.

Beauchemin M, Smith A, Yin VP. Dynamic microRNA-101a and Fosab expression controls zebrafish heart regeneration. Development. 2015 Dec 1;142(23):4026-37. PMID: 26628091. PMCID: PMC4712838.

Campbell AC, Updike DL. CSR-1 and P granules suppress sperm-specific transcription in the C. elegans germline. Development. 2015 May 15;142(10):1745-55. PubMed PMID: 25968310; PubMed Central PMCID: PMC4440928.

Carrier, T.J., King, B.L., and Coffman, J.A.  (2015).  Gene expression changes associated with the developmental plasticity of sea urchin larvae in response to food availability.  Biol. Bull. 228: 171-180.  PMCID: PMC4706744.

Castro JB, Gould TJ. Neuro at the nanoscale: diffraction unlimited imaging with STED nanoscopy. J. Histochem Cytochem (2015) Dec; 63(12): 897-907. PMID: 26392517. PMCID: PMC4823800.

Davis AP, Grondin CJ, Lennon-Hopkins K, Saraceni-Richards C, Sciaky D, King BL, Wiegers TC, Mattingly CJ. The Comparative Toxicogenomics Database’s 10th year anniversary: update 2015. Nucleic Acids Res. 2015 43(Database issue):D914-20. PMID: 25326323. PMCID: PMC4384013.

Dickinson PS, Calkins A and Stevens JS. Related neuropeptides use different balances of unitary mechanisms to modulate the cardiac neuromuscular system in the American lobster, Homarus americanus.  J. Neurophysiology 2015 Feb; 113(3):856-70.  PMID: 25392168 PMCID: PMC4312872.

Dickinson PS, Sreekrishnan A, Kwiatkowski MA, Christie AE..  Distinct or shared actions of peptide family isoforms: I. Peptide-specific actions of pyrokinins in the lobster cardiac neuromuscular system. J Exp Biol. 2015 Sept; 218:2892-2904.  PMID: 26206360. PMCID: PMC4582170.

Dickinson PS, Kurland SC, Qu X, Parker BO, Sreekrishnan A, Kwiatkowski MA, Williams AH, Ysasi AB, Christie AE.. Distinct or shared actions of peptide family isoforms: II. Multiple pyrokinins exert similar effects in the lobster stomatogastric nervous system.  J Exp Biol. 2015 Sept; 218:2905-2917.  PMID: 26206359. PMCID: PMC4582171.

Farnham KR, Dube DH. A semester-long project-oriented biochemistry laboratory based on Helicobacter pylori urease. Biochemistry and Molecular Biology Education. 2015 Jul; 43: 333-340. PMID: 26173574. PMCID: PMC4573817.

Fromm B, Phillipp T, Peck LE, Johansen M, Tarver JE, King BL, Newcomb JM, Sempere LF, Flatmark K, Hovig E, Peterson KJ. A Uniform System for the Annotation of Vertebrate microRNA Genes and the Evolution of the Human microRNAome. Annu Rev Genet. 2015;49:213-42. doi: 10.1146/annurev-genet-120213-092023. Review. 2015. PMID: 26473382; PMCID: PMC4743252.

Gabor KA, Charette JR, Pietraszewski MJ, Wingfield DJ, Shim JS, Millard PJ, Kim CH. ADN-mda5 transgenic zebrafish model demonstrates that Mda5 plays an important role in snakehead rhabdovirus resistance. Dev Comp Immunol. 2015 Jan 26;PubMed PMID: 25634485; NIHMSID: 658653.

Hanke N, King BL, Vaske B, Haller H, Schiffer M. A Fluorescence-Based Assay for Proteinuria Screening in Larval Zebrafish (Danio rerio). Zebrafish. 2015 12(5):372-6.  PMID: 26125680. PMCID: PMC4593894.

Jung D, Adamo MA, Lehman RM, Barnaby R, Jackson CE, Jackson BP, Shaw JR, Stanton BA. A novel variant of aquaporin 3 is expressed in killifish (Fundulus heteroclitus) intestine. Comp Biochem Physiol C Toxicol Pharmacol. 2015 May;171:1-7. PubMed PMID: 25766383; PubMed Central PMCID: PMC4402271.

Kelly AL, Senter-Zapata MJ, Campbell AC, Lust HE, Theriault ME, Andralojc KM, Updike DL. A Forward Genetic Screen for Suppressors of Somatic P Granules in Caenorhabditis elegans. G3 (Bethesda). 2015 Jun 22;5(10):2209-15. doi: 10.1534/g3.115.019257. PubMed PMID: 26100681; PubMed Central PMCID: PMC4593002.

King BL, Shi LF, Kao P, Clusin WT. Calcium activated K+ channels in the electroreceptor of the skate confirmed by cloning. Details of subunits and splicing. Gene. 2015 Dec 11. pii: S0378-1119(15)01481-X. doi: 10.1016/j.gene.2015.12.010. [Epub ahead of print] PubMed PMID: 26687710. PMCID: PMC4724458.

Kohorn BD. (2015) The state of cell wall pectin monitored by associated kinases: A model. Plant Signal Behav. 2015; 10(7):e1035854.  PMID: 26251881. PMCID: PMC4622591.

Lisse TS, Brochu EA, Rieger S. Capturing tissue repair in zebrafish larvae with time-lapse brightfield stereomicroscopy. The Journal of Visualized Experiments, J Vis Exp. 2015 Jan 31;(95). doi: 10.3791/52654. PMID: 25742070. PMCID: PMC4330669.

Palopoli MF, Peden C, Woo C, Akiha K, Ary M, Cruze L, Anderson JL, Phillips PC..  Natural and experimental evolution of sexual conflict within Caenorhabditis nematodes.   BMC Evol Biol. 2015 May;15:93. PMID: 25994934.  PMCID: PMC4455605.

Palopoli MF, Fergus DJ, Minot S, Pei DT, Simison WB, Fernandez-Silva I, Thoemmes MS, Dunn RR, Trautwein M. Global divergence of the human follicle mite Demodex folliculorum: Persistent associations between host ancestry and mite lineages. Proc Natl Acad Sci U S A 2015 Dec. PMID: 26668374. PMCID: PMC4703014.

Pope WH, Bowman CA, Russell DA, Jacobs-Sera D, Asai DJ, Cresawn SG, Jacobs WR Jr, Hendrix RW, Lawrence JG, Hatfull GF, et al, SEA-PHAGE, PHIRE, Mycobacterial Genetics Course. (2015) Whole genome comparison of a large collection of mycobacteriophages reveals a continuum of bacteriophage genetic diversity. eLife (http://dx.doi.org/10.7554/elife.06416)
 PMCID: PMC4408529.

Soundararajan R, Stearns TM, Griswold AL, Mehta A, Czachor A, Fukumoto J, Lockey RF, King BL, Kolliputi N. Detection of canonical A-to-G editing events at 3′ UTRs and microRNA target sites in human lungs using next-generation sequencing. Oncotarget. 2015 6(34):35726-36.  PMID: 26486088. PMCID: PMC4742137.

Soto, I, Graham LC, Richter HJ, Simeone SN, Radell JE, Grabowska W, Funkhouser WK, Howell MC, Howell GR. APOE Stabilization by Exercise Prevents Aging Neurovascular Dysfunction and Complement Induction. PLoS Biol. 2015 October; 13(10): e1002279. Published online 2015 October 29. doi: 10.1371/journal.pbio.1002279  PMCID: PMC4626092.

Strome S, Updike D. Specifying and protecting germ cell fate. Nat Rev Mol Cell Biol. 2015 Jul;16(7):406-16. doi: 10.1038/nrm4009. Review. PubMed PMID: 26122616. PMCID: PMC4698964.

James E. Tarver, Mario dos Reis, Siavash Mirarab, Raymond J. Moran, Sean Parker, Joseph E. O’Reilly, Benjamin L. King, Mary J. O’Connell, Robert J. Asher, Tandy Warnow, Kevin J. Peterson, Philip C.J. Donoghue and Davide Pisani; ‘The Interrelationships of Placental Mammals and the Limits of Phylogenetic Inference’ Genome Biology and Evolution. PMID: 26733575 PMCID: PMC4779606.

Weatherly LM, Shim J, Hashmi HN, Kennedy RH, Hess ST, Gosse JA. Antimicrobial Agent Triclosan is a Proton Ionophore Uncoupler of Mitochondria in Living Rat and Human Mast Cells and in Primary Human Keratinocytes. Journal of Applied Toxicology 2015 Jul 23. PMID: 26204821. PMCID: PMC4724348.

Williams LM, Nivison CL, Ambrose WG Jr, Dobbin R, Locke WL 5th. Lack of adult novel northern lineages of invasive green crab <i>Carcinus maenas</i> along much of the northern US Atlantic coast. Marine ecology progress series. 2015;532:153-159. July 21 2015. PubMed PMID: 28127110; PubMed Central PMCID: PMC5260853.

Yu JC , Fox ZD, Crimp JL, Littleford HE, Jowdry AL and Jackman WR. Hedgehog signaling regulates dental papilla formation and tooth size during zebrafish odontogenesis. Developmental Dynamics 2015 Apr; 244: 577-590.  PMID: 25645398 PMCID: PMC4380796.

2014

Ahmad ST, Steinmetz S, Bussey H, Possidente B, Seggio J. Larval ethanol exposure alters free-running circadian rhythm and per Locus transcription in adult D. melanogaster period mutants. Behavioral Brain Research 2013;241: 50-55. PMID: 23219838. PMCID: PMC3552313 [Available on 2014/3/15].

Archambault L, Linscott J, Swerdlow N, Boyland K, Riley E, ¹Schlax P. Translational efficiency of rpoS mRNA from Borrelia burgdorferi: effects of the length and sequence of the mRNA leader region. Biochem Biophys Res Commun. 2013 Mar 29;433(1):73-8. PMID: 23454119. PMCID: PMC3616328 [Available on 2014/3/29].

Howard A, Rogers AN. Role of translation initiation factor 4G in lifespan regulation and age-related health. Ageing Res Rev. 2014 Jan;13:115-24. PubMed PMID: 24394551; PubMed Central PMCID: PMC3966135.

Ji W, Yang M, Praggastis A, Li Y, Zhou HJ, He Y, Ghazvinian R, Cincotta DJ, Rice KP, Min W. Carbamoylating activity associated with the activation of the anti tumor agent laromustine inhibits angiogenesis by inducing ASK1-dependent endothelial cell death. PLoS One. 2014;9(7):e103224. PubMed PMID: 25068797; PubMed Central PMCID: PMC4113355.

Tra V, Dube D. Glycoscience: Biology and Medicine. Japan: Springer; 2014. Chemical tools to detect and target Helicobacter pylori’s glycoproteins. 479-484p. N/A: Not Journal Yin V. The Physiology of Fishes. 4th edition ed. Evans D, Claiborne J, Currie S, editors. Florida: Taylor and Francis Group; 2014. Chapter 13, Cardiac Regeneration391-404, 453p.

Fidler AL, Vanacore RM, Chetyrkin SV, Pedchenko VK, Bhave G, Yin VP, Stothers CL,Rose KL, McDonald WH, Clark TA, Borza DB, Steele RE, Ivy MT, Aspirnauts, Hudson JK, Hudson BG. A unique covalent bond in basement membrane is a primordial innovation for tissue evolution. Proc Natl Acad Sci U S A. 2014 Jan 7;111(1):331-6. PubMed PMID: 24344311; PubMed Central PMCID: PMC3890831.

Branicky R, Miyazaki H, Strange K, Schafer WR. The voltage-gated anion channels encoded by clh-3 regulate egg laying in C elegans by modulating motor neuron excitability. J Neurosci. 2014 Jan 15;34(3):764-75. PubMed PMID: 24431435; PubMed Central PMCID: PMC3891957.

Coffman JA, Wessels A, DeSchiffart C, Rydlizky K. Oral-aboral axis specification in the sea urchin embryo, IV: hypoxia radializes embryos by preventing the initial spatialization of nodal activity. Dev Biol. 2014 Feb 15;386(2):302-7. PubMed PMID: 24384388; PubMed Central PMCID: PMC3929957.

Updike DL, Knutson AK, Egelhofer TA, Campbell AC, Strome S. Germ-granule components prevent somatic development in the C elegans germline. Curr Biol. 2014 May 5;24(9):970-5. PubMed PMID: 24746798; PubMed Central PMCID: PMC4036631.

Tra VN, Dube DH. Glycans in pathogenic bacteria–potential for targeted covalent therapeutics and imaging agents. Chem Commun (Camb). 2014 May 11;50(36):4659. PubMed PMID: 24647371; PubMed Central PMCID: PMC4049282.

Bavis RW, van Heerden ES, Brackett DG, Harmeling LH, Johnson SM, Blegen HJ, Logan S, Nguyen GN, Fallon SC. Postnatal development of eupneic ventilation and metabolism in rats chronically exposed to moderate hyperoxia. Respir Physiol Neurobiol. 2014 Jul 1;198:1-12. PubMed PMID: 24703970; PubMed Central PMCID: PMC4066817.

Chun RF, Blatter E, Elliott S, Fitz-Gibbon S, Rieger S, Sagasti A, Adams JS, Hewison M. Cloning of a functional 25-hydroxyvitamin D-1α-hydroxylase in zebrafish (Danio rerio). Cell Biochem Funct. 2014 Dec;32(8):675-82. PubMed PMID: 25290078; PubMed Central PMCID: PMC4363119.

Field DJ, Gauthier JA, King BL, Pisani D, Lyson TR, Peterson KJ. Toward consilience in reptile phylogeny: miRNAs support an archosaur, not lepidosaur, affinity for turtles. Evol Dev. 2014 Jul-Aug;16(4):189-96. PubMed PMID: 24798503; PubMed Central PMCID: PMC4215941.

Stone JL, VanWyk EJ, Hale JR. Transmission advantage favors selfing allele in experimental populations of self-incompatible Witheringia solanacea (solanaceae).Evolution. 2014 Jul;68(7):1845-55. PubMed PMID: 24713065; PubMed Central PMCID: PMC4079751.

Kohorn BD, Kohorn SL, Saba NJ, Martinez VM. Requirement for pectin methyl esterase and preference for fragmented over native pectins for wall-associated kinase-activated, EDS1/PAD4-dependent stress response in Arabidopsis. J Biol Chem. 2014 Jul 4;289(27):18978-86. PubMed PMID: 24855660; PubMed Central PMCID: PMC4081937.

Bennett RJ, Forche A, Berman J. Rapid mechanisms for generating genome diversity: whole ploidy shifts, aneuploidy, and loss of heterozygosity. Cold Spring Harb Perspect Med. 2014 Jul 31;4(10)PubMed PMID: 25081629; PubMed Central PMCID: PMC4200206.

Maginnis MS, Nelson CD, Atwood WJ. JC polyomavirus attachment, entry, and trafficking: unlocking the keys to a fatal infection. J Neurovirol. 2014 Jul 31;PubMed PMID: 25078361; PubMed Central PMCID: PMC4312552.

Bing X, Rzezniczak TZ, Bateman JR, Merritt TJ. Transvection-based gene regulation in Drosophila is a complex and plastic trait. G3 (Bethesda). 2014 Sep 11;4(11):2175-87. PubMed PMID: 25213691; PubMed Central PMCID: PMC4232543.

Shaw JR, Hampton TH, King BL, Whitehead A, Galvez F, Gross RH, Keith N, Notch E, Jung D, Glaholt SP, Chen CY, Colbourne JK, Stanton BA. Natural selection canalizes expression variation of environmentally induced plasticity-enabling genes. Mol Biol Evol. 2014 Nov;31(11):3002-15. PubMed PMID: 25158801; PubMed Central PMCID: PMC4209136.

Wartenberg A, Linde J, Martin R, Schreiner M, Horn F, Jacobsen ID, Jenull S, Wolf T, Kuchler K, Guthke R, Kurzai O, Forche A, d’Enfert C, Brunke S, Hube B. Microevolution of Candida albicans in macrophages restores filamentation in a nonfilamentous mutant.PLoS Genet. 2014 Dec;10(12):e1004824. PubMed PMID: 25474009; PubMed Central PMCID: PMC4256171.

Palopoli MF, Minot S, Pei D, Satterly A, Endrizzi J. Complete mitochondrial genomes of the human follicle mites Demodex brevis and D folliculorum: novel gene arrangement,truncated tRNA genes, and ancient divergence between species. BMC Genomics. 2014 Dec 16;15:1124. PubMed PMID: 25515815; PubMed Central PMCID: PMC4320518.

Prentiss NK, Vasileiadou K, Faulwetter S, Arvanitidis C, Hove HA. A new genus and species of Serpulidae (Annelida, Polychaeta, Sabellida) from the Caribbean Sea. Zootaxa. 2014 Dec 22;3900(2):204-22. PubMed PMID: 25543733; NIHMSID: 663724.

Rieger S, Zhao H, Martin P, Abe K, Lisse TS. The role of nuclear hormone receptors in cutaneous wound repair. Cell Biochem Funct. 2015 Jan;33(1):1-13. doi: 10.1002/cbf.3086. Epub 2014 Dec 22. Review. PubMed PMID: 25529612; PubMed Central PMCID: PMC4357276.

2013

Bateman JR, Palopoli MF, *Dale ST, *Stauffer JE, *Shah AL, *Johnson JE, *Walsh CW, *Flaten H, *Parsons CM. Captured segment exchange: a strategy for custom engineering large genomic regions in Drosophila melanogaster. Genetics 2013 Feb;193(2):421-30. PMID: 23150604. PMCID: PMC3567733.

Bavis RW, *Fallon SC, Dmitrieff EF. Chronic hyperoxia and the development of the carotid body. Respir Physiol Neurobiol. 2013;185: 94-104. PMID: 22640932. PMCID: PMC3448014.

Davis AP, Murphy CG, Johnson R, Lay JM, Lennon-Hopkins K, Saraceni-Richards C, Sciaky D, King BL, Rosenstein MC, Wiegers TC, Mattingly CJ. The Comparative Toxicogenomics Database: update 2013. Nucleic Acids Res. 2013 41(D1):D1104-14. PMID: 23093600. PMCID: PMC3531134.

Lisse TS, Chun RF, ¹Rieger S, Adams JS, Hewison M: Vitamin D activation of functionally distinct regulatory miRNAs in primary human osteoblasts. J Bone Miner Res. 2013 Jun;28(6):1478-88.PMID: 23362149. PMCID: PMC3663893 [Available on 2014/6/1].

Marakalala MJ, Vautier S, Potrykus J, Walker LA, Shepardson KM, Hopke A, Mora-Montes HM, Kerrigan A, Netea MG, Murray GI, MacCallum D M, ¹Wheeler R, Munro CA, Gow NAR, Cramer RA, Brown AJ, Brown GD. Differential adaptation of Candida albicans in vivo modulates immune recognition by Dectin-1. PLoS Pathogens 2013 Apr;9(4):e1003315. PMID: 23637604. PMCID: PMC3630191.

Naing SH, *Parvez S, *Pender-Cudlip M, Groves JT, Austin RN. Substrate specificity and reaction mechanism of purified alkane hydroxylase from the hydrocarbonoclastus bacterium Alcanivorax borkumensis (AbAlkB). Journal of Inorganic Biochemistry 2013 Apr;121:46-52. PMID: 23337786. PMCID: PMC3595352 [Available on 2014/4/1].

Williams AH, Kwiatkowski MA, Mortimer AL, Marder E, Zeeman ML, Dickinson PS. Animal-to-animal variability in the phasing of the crustacean cardiac motor pattern: an experimental and computational analysis. J Neurophysiology 2013 May;109(10):2451-65. PMID: 23446690. PMCID: PMC3653045 [Available on 2014/5/15].

Yamada T, Bhate MP, Strange K. Regulatory phosphorylation induces extracellular conformational changes in a CLC anion channel. Biophys J. 2013 May 7;104(9):1893-904. PMID: 23663832. PMCID: PMC3647193 [Available on 2014/5/7].

Harris LJ, Martinez SA, Keyser BR, Dyer WE, Johnson RR. Functional analysis of TaABF1 during abscisic acid and gibberellin signalling in aleurone cells of cereal grains.Seed Sci Res. 2013 Jun;23(2):89-98. PubMed PMID: 24578593; PubMed CentralPMCID: PMC3933958.

St Laurent R, Helm SR, Glenn MJ. Reduced cocaine-seeking behavior in heterozygous BDNF knockout rats. Neurosci Lett. 2013 Jun 7;544:94-9. PubMed PMID: 23583595;PubMed Central PMCID: PMC3773519.

St Laurent R, O’Brien LM, Ahmad ST. Sodium butyrate improves locomotor impairment and early mortality in a rotenone-induced Drosophila model of Parkinson’s disease. Neuroscience. 2013 Aug 29;246:382-90. PubMed PMID: 23623990; PubMed Central. PMCID: PMC3721507.

McCarty CM, Coffman JA. Developmental cis-regulatory analysis of the cyclin D gene in the sea urchin Strongylocentrotus purpuratus. Biochem Biophys Res Commun. 2013 Oct 25;440(3):413-8. PubMed PMID: 24090975; PubMed Central PMCID: PMC3871186.

Millard JT, Chuang E, Lucas JS, Nagy EE, Davis GT. Case-Study Investigation of Equine Maternity via PCR-RFLP: A Biochemistry Laboratory Experiment. J Chem Educ. 2013 Nov 12;90(11)PubMed PMID: 24363455; PubMed Central PMCID: PMC3867210.

2012

Bateman JR, Johnson JE, *Locke MN. Comparing enhancer action in cis and in trans. Genetics 2012a;191: 1143-1155. PubMed PMID: 22649083. PMCID: PMC3415998.

Bateman JR,Larschan E,D’Souza R, *Marshall LS, Dempsey KE, Johnson JE, Mellone BG, Kuroda MI. A genome-wide screen identifies genes that affect somatic homolog pairing in Drosophila. G3: Genes, Genomes, Genetics 2012b;2: 731-740. PMID: 22870396. PMCID: PMC3385979.

Brothers K, ¹Wheeler RT. Non-invasive imaging of zebrafish larvae as a model of disseminated candidiasis. Journal of Visualized Experiments 2012;30(65):pii 4051. PMID: 22872032. PMCID: PMC3468152.

Carey CC, Ewing HA, Cottingham KL, Weathers KC, Thomas RQ, and Haney JF. Occurrence and toxicity of the cyanobacterium Gloeotrichia echinulata for low nutrient lakes in the northeastern United States.  Aquatic Ecology 46:395-409, 2012.

Christie AE, Nolan DH, *Garcia ZA, McCoole MD, Harmon SM, Congdon-Jones B, Ohno P, Hartline N, Congdon CB, Baer KN, Lenz PH. Bioinformatic prediction of arthropod/nematode-like peptides in non-arthropod, non-nematode members of the Ecdysozoa. Gen Comp Endocrinol. 2011 Feb 1;170(3):480-6. PubMed PMID: 21074533. NIHMS: 252649.

Collin GB, Marshall JD, King BL, Milan G, Maffei P, Jagger DJ, Naggert JK. The Alström syndrome protein, ALMS1, interacts with α-actinin and components of the endosome recycling pathway. PLoS One 2012;7(5):e37925. PMID: 22693585. PMCID: PMC3365098.

Corriveau JA, ¹Glenn MJ. Postnatal choline levels mediate cognitive deficits in a rat model of schizophrenia. Pharmacology, Biochemistry, & Behavior 2012;103:60-68. PMID: 22917834. PMCID: PMC3537899.

Cutler CP, Harmon S, Walsh J, Burch K. Characterization of aquaporin 4 protein expression and localization in tissues of the dogfish (Squalus acanthias). Front Physiol. 2012;3:21. PMID: 22363294. PMCID: PMC3279706.

Cutler CP, MacIver B, Cramb G, Zeidel M. Aquaporin 4 is a ubiquitously expressed isoform in the dogfish (Squalus acanthias) shark. Front Physiol. 2011;2:107. PMID: 22291652. PMCID: PMC3254168.

Dmitrieff EF, *Piro SE, *Broge TA Jr., *Dunmire KB, Bavis RW. Carotid body growth during chronic postnatal hyperoxia. Respir Physiol Neurobiol. 2012;180: 193-203. PMID: 22138179. PMCID: PMC3273607.

Glenn MJ, *Adams RS, *McClurg L. Supplemental dietary choline during development exerts antidepressant-like effects in adult female rats. Brain Research 2012;1443: 52-63. PMID: 22305146. PMCID: PMC3327365.

Goodson JL, Kelly AM, Kingsbury MA, Thompson RR. An aggression-specific cell type in the anterior hypothalamus of finches. Proc Natl Acad Sci USA. 2012;109(34):13847-52. PMID:22872869. PMCID: PMC3427066.

King BL, Davis AP, Rosenstein MC, Wiegers TC, Mattingly CJ. Ranking transitive chemical-disease inferences using local network topology in the comparative toxicogenomics database. PLoS One 2012;7(11):e46524. PMID: 23144783. PMCID: PMC3492369.

Lee E, Strange K. GCN-2 dependent inhibition of protein synthesis activates osmosensitive gene transcription in C. elegans via WNK and Ste20 kinase signaling. Am. J. Physiol. (Cell Physiol.) 2012 Dec;303(12):C1269-77. PMID: 23076791. PMCID: PMC3532491 [Available on 2013/12/15].

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Liang X, Da Paula AC, Bozóky Z, Zhang H, Bertrand CA, Peters KW, Forman-Kay JD, Frizzell RA. Phosphorylation-dependent 14-3-3 protein interactions regulate CFTR biogenesis. Mol Biol Cell. 2012 Mar;23(6):996-1009. PMID: 22278744. PMCID: PMC3302758.

McCoole M, *Atkinson N, *Graham D, *Grasser E, *Joselow A, *McCall N, *Welker A, *Wilsterman Jr E, *K. Baer, Tilden A, Christie A. Genomic analyses of aminergic signaling systems (dopamine, octopamine and serotonin) in Daphnia pulex. Comp Biochem Physiol D: Genomics Proteomics 2012 Mar;7; 7(1):35-58. PMID: 22137767. NIHMSID: 336880.

Meredith M, *Parry E, Guay J, *Markham N, Danner GR, Johnson K, Barkay T, Fekete F. Concomitant antibiotic and mercury resistance among gastrointestinal microflora of feral brook trout, Salvelinus fontinalis. Current Microbiology 2012;65: 575-582. PMID: 22850694. NIHMS: 442546.

Millard J, *McGowan E, *Bradley S. Diepoxybutane interstrand cross-links induce DNA bending.   Biochimie 2012;94: 574-577. PMID: 21839139. PMCID: PMC3236281.

Miyazaki H, Yamada T, Parton A, Morrison R, Kim S, Beth AH, Strange K. CLC anion channel regulatory phosphorylation and conserved signal transduction domains. Biophys J. 2012 Oct 17;103(8):1706-18. PMID: 23083714. PMCID: PMC3475328 [Available on 2013/10/17].

Miyazaki H, Strange K. Differential regulation of a CLC anion channel by SPAK kinase ortholog-mediated multisite phosphorylation. Am J Physiol Cell Physiol. 2012 Jun 15;302(12):C1702-12. PMID: 22357738. PMCID: PMC3378076 [Available on 2013/6/15].

Jiménez-López C, Collette JR, Brothers KM, Shepardson KM, Cramer RA, ¹Wheeler RT, Lorenz MC. Candida albicans induces arginine biosynthetic genes in response to host-derived reactive oxygen species. Eukaryotic Cell 2012 9 November;10.1128/EC.00290-12. PMID: 23143683. PMCID: PMC3535846.

Jung D, MacIver B, Jackson BP, Barnaby R, Sato JD, Zeidel ML, Shaw JR, Stanton BA. A novel aquaporin 3 in killifish (Fundulus heteroclitus) is not an arsenic channel. Toxicol Sci. 2012 May;127(1):101-9. PMID: 22323512. PMCID: PMC3327866.

Koeppen K, Chapline C, Sato JD, Stanton BA. Nedd4-2 does not regulate wt-CFTR in human airway epithelial cells. Am J Physiol Lung Cell Mol Physiol. 2012 Oct 15;303(8):L720-7. Epub 2012 Aug 17. PMID: 22904170. PMCID: PMC3469630 [Available on 2013/10/15].

Kohorn BD, Kohorn SL, *Todorova T, Baptiste G, Stansky K, McCullough M. A dominant allele of Arabidopsis pectin-binding wall-associated kinase induces a stress response suppressed by MPK6 but not MPK3 mutations. Mol Plant. 2012;5(4):841-51. PMID: 22155845. PMCID: PMC3399699 [Available on 2013/7/19].

Kohorn BD, Kohorn SL.  The cell wall associated kinases, WAKs, as pectin receptors. Frontiers in Plant Science 2012;3:88, 1-4. PMID: 22639672. PMCID: PMC3355716.

Lenz PH, Unal E, Hassett RP, Smith CM, Bucklin A, Christie AE, Towle DW. Functional genomics resources for the North Atlantic copepod, Calanus finmarchicus: EST database and physiological microarray. Comp Biochem Physiol Part D Genomics Proteomics 2012 Jun;7(2):110-23. Epub 2011 Dec 29. PMID: 22277925. NIHMSID: 346755. PMCID: PMC3586334.

Lyson TR, Sperling EA, Heimberg AM, Gauthier JA, King BL, Peterson KJ. MicroRNAs support a turtle + lizard clade. Biol Lett. 2012;8(1):104-7. PMID: 21775315. PMCID: PMC3259949.

Notch EG, Chapline C, Flynn E, *Lameyer T, *Lowell A, Sato JD, Shaw JR, Stanton BA. Mitogen activated protein kinase 14-1 regulates serum glucocorticoid kinase 1 during seawater acclimation in Atlantic killifish, Fundulus heteroclitus. Comp Biochem and Physiol – Part A: Mol & Integr Physiol. 2012 Aug;162(4):443-8. Epub 2012 May 2. PMID: 22575607. PMCID: PMC3365625.

Rice KP, Klinkerch EJ, Gerber SA, *Schleicher TR, Kraus TJ, *Buros CM. Thioredoxin reductase is inhibited by the carbamoylating activity of the anticancer sulfonylhydrazine drug Laromustine Mol Cell Biochem. 2012;370:199-207. PMID: 22864532. PMCID: PMC3469748 [Available on 2013/11/1].

Stone J, *Crystal P, *Devlin E, Downer R, Cameron D. Highest genetic diversity at the northern range limit of the rare orchid Isotria medeoloides. Heredity 2012;109: 215-221. PMID: 22692268. PMCID: PMC3464020 [Available on 2013/10/1].

Seritrakul P, Samarut E, *Lama TS, Gilbert Y, Laudet V, ¹Jackman WR. Retinoic acid expands the evolutionarily-reduced dentition of zebrafish. The FASEB Journal 2012;26: 5014-5024. PMID: 22942074. PMCID: PMC3509061.

Sun FF, Johnson JE, Zeidler MP, ¹Bateman JR. Simplified insertion of transgenes onto balancer chromosomes via recombinase-mediated cassette exchange. G3 (Bethesda) 2012;2: 551-553. PMID: 22670225. PMCID: PMC3362938.

Tobin DM, May RC, ¹Wheeler RT. Zebrafish: a see-through host and a fluorescent toolbox to probe host-pathogen interaction. PLoS Pathogens 2012;8(1):e1002349, PMID: 22241986. PMCID: PMC3252360.

Tossidou I, Niedenthal R, Klaus M, Teng B, Worthmann K, King BL, Peterson KJ, Haller H, Schiffer M. CD2AP regulates SUMOylation of CIN85 in podocytes. Mol Cell Biol. 2012;32(6):1068-79. PMID: 22203040. PMCID: PMC3295011.

Walker MB, King BL, Paigen K. Clusters of ancestrally related genes that show paralogy in whole or in part are a major feature of the genomes of humans and other species. PLoS One 2012;7(4):e35274. PMID: 22563380. PMCID: PMC3338513.

Wang Q, Arighi CN, King BL, Polson SW, Vincent J, Chen C, Huang H, Kingham BF, Page ST, Rendino MF, Thomas WK, Udwary DW, Wu CH; North East Bioinformatics Collaborative Curation Team. Community annotation and bioinformatics workforce development in concert–Little Skate Genome Annotation Workshops and Jamborees. Database (Oxford) 2012;2012:bar064. PMID: 22434832. PMCID: PMC3308154.

Wiwatpanit T, Powers B, Dickinson PS. Inter-animal variability in the effects of C-type allatostatin on the cardiac neuromuscular system in the lobster Homarus americanus. The Journal of Experimental Biology 2012;215, 2308-2318. PMID: 22675192. PMCID: PMC3368622.

Yin VP, Lepilina A, Smith A, Poss KD. Regulation of zebrafish heart regeneration by miR-133. Dev Biol. 2012 May 15;365(2):319-27. Epub 2012 Feb 20. PMID: 22374218. PMCID: PMC3342384.